Evidence map›Paper›PMID 26411341›Full record

ArticleCell metabolism2015

Integrated, Step-Wise, Mass-Isotopomeric Flux Analysis of the TCA Cycle.

Tiago C Alves, Rebecca L Pongratz, Xiaojian Zhao, Orlando Yarborough, Sam Sereda, Orian Shirihai, Gary W Cline, Graeme Mason, Richard G Kibbey

Registry-linked trialOpen access · bronzeAbstract read
In one paragraph

Article in Cell metabolism, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT02748369 (In Vivo Assessment of the Tricarboxylic Acid Cycle Flux in the Muscle and Splanchnic Bed of Humans), which is not on this map. Cited by 86 papers.

0numbers the graph read from it
0cells of the map it votes in
86citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT02748369 phase1completednot on this mapstarted 2016, after this paper: background citation

In Vivo Assessment of the Tricarboxylic Acid Cycle Flux in the Muscle and Splanchnic Bed of Humans: A Pilot Study

TypeinterventionalSponsorK. Sreekumaran NairRan2016 to 2017Enrolled17ConditionsNormal Cellular MetabolismArmsSomatostatin, Glucagon
3 · Its place in the literature

Who cites it

86 citing papers in PubMed, 133 citations in OpenAlex.

  1. Article
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  3. Article
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  5. Article
  6. Targeted Metabolomic Methods forJournal of proteome research · 2025
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  11. NMR-Based Stable Isotope Tracing of Cancer Metabolism.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  12. Metabolic Pathway Tracing for NADMethods in molecular biology (Clifton, N.J.) · 2025
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review

26 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Tiago C AlvesDepartment of Internal Medicine, Yale University School of Medicine, New Haven, CT 06520, USA.
Rebecca L PongratzDepartment of Internal Medicine, Yale University School of Medicine, New Haven, CT 06520, USA.
Xiaojian ZhaoDepartment of Internal Medicine, Yale University School of Medicine, New Haven, CT 06520, USA.
Orlando YarboroughDepartment of Internal Medicine, Yale University School of Medicine, New Haven, CT 06520, USA.
Sam SeredaDepartment of Medicine, Boston University School of Medicine, Boston, MA 02118, USA.
Orian ShirihaiDepartment of Medicine, Boston University School of Medicine, Boston, MA 02118, USA.
Gary W ClineDepartment of Internal Medicine, Yale University School of Medicine, New Haven, CT 06520, USA.
Graeme MasonDepartment of Diagnostic Radiology and Psychiatry, Yale University School of Medicine, New Haven, CT 06520, USA.
Richard G KibbeyDepartment of Internal Medicine, Yale University School of Medicine, New Haven, CT 06520, USA; Department of Cellular & Molecular Physiology, Yale University School of Medicine, New Haven, CT 06520, USA. Electronic address: richard.kibbey@yale.edu.
Yale University · USBoston University · US

Funding

YALE UNIVERSITY CLINICAL AND TRANSLATIONAL SCIENCE AWARD PROGRAMUL1RR024139 · NCRR · YALE UNIVERSITY · PI SHERWIN, ROBERT S · 2006 to 2011
$56.8M
Yale Diabetes Research CenterP30DK045735 · NIDDK · YALE UNIVERSITY · PI Richard A Flavell · 1993 to 2026
$44.0M
Yale Liver CenterP30DK034989 · NIDDK · YALE UNIVERSITY · PI WAJAHAT Zafar MEHAL · 1986 to 2026
$31.1M
Renal Physiology and Phenotyping CoreP30DK079310 · NIDDK · YALE UNIVERSITY · PI ARONSON, PETER S. · 2008 to 2022
$16.8M
Yale Mouse Metabolic Phenotyping CenterU24DK059635 · NIDDK · YALE UNIVERSITY · PI SHULMAN, GERALD I · 2001 to 2015
$8.9M
Brain Acetate and Ethanol Metabolism in Alcohol Dependence and AbuseR01AA021984 · NIAAA · YALE UNIVERSITY · PI MASON, GRAEME F. · 2013 to 2017
$2.7M
The role of the mitochondrial GTP cycle in insulin secretionR01DK092606 · NIDDK · YALE UNIVERSITY · PI KIBBEY, RICHARD G · 2011 to 2015
$1.8M
Characterization of Mitochondrial GTP as an Intramitochondrial Metabolic SignalK08DK080142 · NIDDK · YALE UNIVERSITY · PI KIBBEY, RICHARD G · 2008 to 2012
$763k
NCRR NIH HHS UL1 RR-0024139NCRR NIH HHS UL1 RR024139NIAAA NIH HHS R01 AA-021984NIAAA NIH HHS R01 AA021984NIDDK NIH HHS K08 DK-080142NIDDK NIH HHS K08 DK080142NIDDK NIH HHS P30 DK034989NIDDK NIH HHS P30-DK-034989NIDDK NIH HHS P30 DK045735NIDDK NIH HHS P30 DK079310NIDDK NIH HHS P30 DK-45735NIDDK NIH HHS R01 DK-092606NIDDK NIH HHS R01 DK092606NIDDK NIH HHS U24 DK059635NIDDK NIH HHS U24DK-059635
6 · The paper itself

Abstract

Mass isotopomer multi-ordinate spectral analysis (MIMOSA) is a step-wise flux analysis platform to measure discrete glycolytic and mitochondrial metabolic rates. Importantly, direct citrate synthesis rates were obtained by deconvolving the mass spectra generated from [U-(13)C6]-D-glucose labeling for position-specific enrichments of mitochondrial acetyl-CoA, oxaloacetate, and citrate. Comprehensive steady-state and dynamic analyses of key metabolic rates (pyruvate dehydrogenase, β-oxidation, pyruvate carboxylase, isocitrate dehydrogenase, and PEP/pyruvate cycling) were calculated from the position-specific transfer of (13)C from sequential precursors to their products. Important limitations of previous techniques were identified. In INS-1 cells, citrate synthase rates correlated with both insulin secretion and oxygen consumption. Pyruvate carboxylase rates were substantially lower than previously reported but showed the highest fold change in response to glucose stimulation. In conclusion, MIMOSA measures key metabolic rates from the precursor/product position-specific transfer of (13)C-label between metabolites and has broad applicability to any glucose-oxidizing cell.

Indexed as

Acetyl Coenzyme AAnimalsCarbon IsotopesCitratesCitric AcidCitric Acid CycleInsulinIsocitrate DehydrogenaseOxaloacetic AcidOxidation-ReductionOxygen ConsumptionPyruvate CarboxylasePyruvate Dehydrogenase ComplexPyruvic AcidRatsAcetyl Coenzyme ACarbon IsotopesCitratesCitric AcidInsulinIsocitrate DehydrogenaseOxaloacetic AcidPyruvate CarboxylasePyruvate Dehydrogenase ComplexPyruvic Acid

Identifiers

PMID26411341
PMCPMC4635072
OpenAlexW1949786344

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.