Evidence map›Paper›PMID 26408201›Full record

ArticleThe Journal of biological chemistry2015

Plant Protochlorophyllide Oxidoreductases A and B: CATALYTIC EFFICIENCY AND INITIAL REACTION STEPS.

Alessio Garrone, Nataliya Archipowa, Peter F Zipfel, Gudrun Hermann, Benjamin Dietzek

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 43 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Discovery of a MarineMarine drugs · 2026
    Article
  5. Light dependent protochlorophyllide oxidoreductase: a succinct look.Physiology and molecular biology of plants : an international journal of functional plant biology · 2024
    Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. Article
  14. Plant direct · 2020
    Article
  15. Crystal structures of cyanobacterial light-dependent protochlorophyllide oxidoreductase.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Alessio GarroneDepartment of Biochemistry and Biophysics, and the Department of Physical Chemistry, Jena D-07743, Germany; Leibniz Institute of Photonic Technology, Jena D-07743, Germany.
Nataliya ArchipowaDepartment of Biochemistry and Biophysics, and the Department of Physical Chemistry, Jena D-07743, Germany.
Peter F ZipfelDepartment of Infection Biology, Leibniz Institute for Natural Product Research and Infection Biology, Jena D-07743, Germany; Friedrich Schiller University of Jena, Jena D-07743, Germany.
Gudrun HermannDepartment of Biochemistry and Biophysics, and the Department of Physical Chemistry, Jena D-07743, Germany; Friedrich Schiller University of Jena, Jena D-07743, Germany. Electronic address: Gudrun.Hermann@uni-jena.de.
Benjamin DietzekDepartment of Biochemistry and Biophysics, and the Department of Physical Chemistry, Jena D-07743, Germany; Leibniz Institute of Photonic Technology, Jena D-07743, Germany.
Leibniz Institute of Photonic Technology · DEFriedrich Schiller University Jena · DELeibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. - Hans-Knöll-Institut (HKI) · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The enzyme protochlorophyllide oxidoreductase (POR, EC 1.3.1.33) has a key role in plant development. It catalyzes one of the later steps in chlorophyll synthesis, the light-induced reduction of protochlorophyllide (PChlide) into chlorophyllide (Chlide) in the presence of NADPH. Two isozymes of plant POR, POR A and POR B from barley, which differ in their function during plant life, are compared with respect to their substrate binding affinity, catalytic efficiency, and catalytic mechanism. POR B as compared with POR A shows an 5-fold higher binding affinity for PChlide and an about 6-fold higher catalytic efficiency measured as kcat/Km. Based on the reaction intermediates, which can be trapped at low temperatures the same reaction mechanism operates in both POR A and POR B. In contrast to results reported for POR enzymes from cyanobacteria, the initial light-driven step, which occurs at temperatures below 180 K already involves the full chemistry of the photoreduction and yields the reaction product, Chlide, in an enzyme-bound form. The subsequent dark reactions, which include cofactor (NADP(+)) release and cofactor (NADPH) rebinding, show different temperature dependences for POR A and POR B and suggest a higher conformational flexibility of POR B in the surrounding active center. Both the higher substrate binding affinity and well adapted enzyme dynamics are held responsible for the increased catalytic activity of POR B as compared with POR A.

Indexed as

BiocatalysisChlorophyllCyanobacteriaHordeumOxidoreductasesProtein BindingProtochlorophyllideChlorophyllOxidoreductasesProtochlorophyllidechlorophyllchlorophyll biosynthesisenzyme kineticslow temperature absorption spectroscopyNADPH:protochlorophyllide oxidoreductaseplant biochemistryreductaseultraviolet-visible spectroscopy (UV-Vis spectroscopy)

Identifiers

PMID26408201
PMCPMC4653708
OpenAlexW2287158980

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.