Evidence map›Paper›PMID 26407886›Full record

ArticleApplied and environmental microbiology2015

Prevalence and distribution of Listeria monocytogenes inlA alleles prone to phase variation and inlA alleles with premature stop codon mutations among human, food, animal, and environmental isolates.

Clyde S Manuel, Anna Van Stelten, Martin Wiedmann, Kendra K Nightingale, Renato H Orsi

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Article
  2. Premature stop codons inBioscience of microbiota, food and health · 2026
    Article
  3. Genomic Landscape and Antimicrobial Resistance ofFoods (Basel, Switzerland) · 2025
    Article
  4. Unveiling the persistent threat: recent insights intoJournal of food science and technology · 2024
    Review
  5. Article
  6. Article
  7. Article
  8. Evaluation of the Virulence Potential ofInternational journal of molecular sciences · 2023
    Article
  9. Whole-Genome Sequencing-Based Characterization ofApplied and environmental microbiology · 2022
    Article
  10. Newly Designed Primers for the Sequencing of theInternational journal of molecular sciences · 2022
    Article
  11. PervasiveApplied and environmental microbiology · 2022
    Review
  12. Microorganisms · 2022
    Review
  13. Article
  14. Article
  15. Intensive Environmental Surveillance Plan forFoods (Basel, Switzerland) · 2021
    Article
  16. Whole Genome Sequence Analysis of Phage-ResistantPathogens (Basel, Switzerland) · 2021
    Article
  17. AIMS microbiology · 2021
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Clyde S ManuelDepartment of Animal Sciences, Colorado State University, Fort Collins, Colorado, USA.
Anna Van SteltenDepartment of Animal Sciences, Colorado State University, Fort Collins, Colorado, USA Department of Animal and Food Sciences, Texas Tech University, Lubbock, Texas, USA.
Martin WiedmannDepartment of Food Science, Cornell University, Ithaca, New York, USA.
Kendra K NightingaleDepartment of Animal Sciences, Colorado State University, Fort Collins, Colorado, USA Department of Animal and Food Sciences, Texas Tech University, Lubbock, Texas, USA.
Renato H OrsiDepartment of Food Science, Cornell University, Ithaca, New York, USA rho2@cornell.edu.ORCID http://orcid.org/0000-0003-4933-9817

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In Listeria monocytogenes, 18 mutations leading to premature stop codons (PMSCs) in the virulence gene inlA have been identified to date. While most of these mutations represent nucleotide substitutions, a frameshift deletion in a 5' seven-adenine homopolymeric tract (HT) in inlA has also been reported. This HT may play a role in phase variation and was first identified among L. monocytogenes lineage II ribotype DUP-1039C isolates. In order to better understand the distribution of different inlA mutations in this ribotype, a newly developed multiplex real-time PCR assay was used to screen 368 DUP-1039C isolates from human, animal, and food-associated sources for three known 5' inlA HT alleles: (i) wild-type (WT) (A7), (ii) frameshift (FS) (A6), and (iii) guanine interruption (A2GA4) alleles. Additionally, 228 DUP-1039C isolates were screened for all inlA PMSCs; data on the presence of all inlA PMSCs for the other 140 isolates were obtained from previous studies. The statistical analysis based on 191 epidemiologically unrelated strains showed that strains with inlA PMSC mutations (n = 41) were overrepresented among food-associated isolates, while strains encoding full-length InlA (n = 150) were overrepresented among isolates from farm animals and their environments. Furthermore, the A6 allele was overrepresented and the A7 allele was underrepresented among food isolates, while the A6 allele was underrepresented among farm and animal isolates. Our results indicate that genetic variation in inlA contributes to niche adaptation within the lineage II subtype DUP-1039C.

Indexed as

AllelesAnimalsBacterial ProteinsBase SequenceCodon, NonsenseFood MicrobiologyGene FrequencyGenotypeHumansListeria monocytogenesListeriosisPolymorphism, Single NucleotideSequence Analysis, DNABacterial ProteinsCodon, Nonsenseinternalin protein, Bacteria

Identifiers

PMID26407886
PMCPMC4644647

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.