Evidence map›Paper›PMID 26407885›Full record

ArticleApplied and environmental microbiology2015

Sample dilution and bacterial community composition influence empirical leucine-to-carbon conversion factors in surface waters of the world's oceans.

Eva Teira, Víctor Hernando-Morales, Francisco M Cornejo-Castillo, Laura Alonso-Sáez, Hugo Sarmento, Joaquín Valencia-Vila, Teresa Serrano Catalá, Marta Hernández-Ruiz, Marta M Varela, Isabel Ferrera and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 8 institutions in 3 countries.

Eva TeiraUniversidade de Vigo, Vigo, Spain teira@uvigo.es.
Víctor Hernando-MoralesUniversidade de Vigo, Vigo, Spain.
Francisco M Cornejo-CastilloInstitut de Ciències del Mar, CSIC, Barcelona, Spain.
Laura Alonso-SáezAZTI, Sukarrieta, Spain Instituto Español de Oceanografía, Centro Oceanográfico de Xixón, Xixón, Spain.
Hugo SarmentoDepartment of Hydrobiology, Federal University of São Carlos, São Carlos, São Paulo, Brazil.
Joaquín Valencia-VilaInstituto Español de Oceanografía, Centro Oceanográfico de A Coruña, A Coruña, Spain.
Teresa Serrano CataláUniversidad de Granada, Granada, Spain.
Marta Hernández-RuizUniversidade de Vigo, Vigo, Spain.
Marta M VarelaInstituto Español de Oceanografía, Centro Oceanográfico de A Coruña, A Coruña, Spain.
Isabel FerreraInstitut de Ciències del Mar, CSIC, Barcelona, Spain.
Xosé Anxelu Gutiérrez MoránRed Sea Research Center, Division of Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia Instituto Español de Oceanografía, Centro Oceanográfico de Xixón, Xixón, Spain.
Josep M GasolInstitut de Ciències del Mar, CSIC, Barcelona, Spain.
Universidade de Vigo · ESCentro Oceanográfico de A CoruñaInstitut de Ciències del Mar · ESAZTI · ESInstitut Català de Ciències del Clima · ESKing Abdullah University of Science and Technology · SAUniversidad de Granada · ESUniversidade Federal de São Carlos · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The transformation of leucine incorporation rates to prokaryotic carbon production rates requires the use of either theoretical or empirically determined conversion factors. Empirical leucine-to-carbon conversion factors (eCFs) vary widely across environments, and little is known about their potential controlling factors. We conducted 10 surface seawater manipulation experiments across the world's oceans, where the growth of the natural prokaryotic assemblages was promoted by filtration (i.e., removal of grazers [F treatment]) or filtration combined with dilution (i.e., also relieving resource competition [FD treatment]). The impact of sunlight exposure was also evaluated in the FD treatments, and we did not find a significant effect on the eCFs. The eCFs varied from 0.09 to 1.47 kg C mol Leu(-1) and were significantly lower in the FD than in the F samples. Also, changes in bacterial community composition during the incubations, as assessed by automated ribosomal intergenic spacer analysis (ARISA), were more pronounced in the FD than in the F treatments, compared to unmanipulated controls. Thus, we discourage the common procedure of diluting samples (in addition to filtration) for eCF determination. The eCFs in the filtered treatment were negatively correlated with the initial chlorophyll a concentration, picocyanobacterial abundance (mostly Prochlorococcus), and the percentage of heterotrophic prokaryotes with high nucleic acid content (%HNA). The latter two variables explained 80% of the eCF variability in the F treatment, supporting the view that both Prochlorococcus and HNA prokaryotes incorporate leucine in substantial amounts, although this results in relatively low carbon production rates in the oligotrophic ocean.

Indexed as

MicrobiotaBacteriaBacteriological TechniquesCarbonEnvironmental MicrobiologyLeucineOceans and SeasSeawaterTropical ClimateCarbonLeucine

Identifiers

PMID26407885
PMCPMC4651073
OpenAlexW2117629101

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.