Evidence map›Paper›PMID 26407850›Full record

ArticleBMC genomics2015

Glutamine rapidly induces the expression of key transcription factor genes involved in nitrogen and stress responses in rice roots.

Chia-Cheng Kan, Tsui-Yun Chung, Yan-An Juo, Ming-Hsiun Hsieh

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
11.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 147 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Chia-Cheng KanInstitute of Plant and Microbial Biology, Academia Sinica, Taipei, 11529, Taiwan. kancc@gate.sinica.edu.tw.
Tsui-Yun ChungInstitute of Plant and Microbial Biology, Academia Sinica, Taipei, 11529, Taiwan. woodchung@gmail.com.
Yan-An JuoInstitute of Plant and Microbial Biology, Academia Sinica, Taipei, 11529, Taiwan. yummy12300@hotmail.com.
Ming-Hsiun HsiehInstitute of Plant and Microbial Biology, Academia Sinica, Taipei, 11529, Taiwan. ming@gate.sinica.edu.tw.
Institute of Plant and Microbial Biology, Academia Sinica · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundGlutamine is a major amino donor for the synthesis of amino acids, nucleotides, and other nitrogen-containing compounds in all organisms. In addition to its role in nutrition and metabolism, glutamine can also function as a signaling molecule in bacteria, yeast, and humans. By contrast, the functions of glutamine in nutrition and as a signaling molecule remain unclear in plants.

resultsWe demonstrated that glutamine could effectively support the growth of rice seedlings. In glutamine-treated rice roots, the glutamine contents increased dramatically, whereas levels of glutamate remained relatively constant. Transcriptome analysis of rice roots revealed that glutamine induced the expression of at least 35 genes involved in metabolism, transport, signal transduction, and stress responses within 30 min. Interestingly, 10 of the 35 early glutamine responsive genes encode putative transcription factors, including two LBD37-like genes that are involved in the regulation of nitrogen metabolism. Glutamine also rapidly induced the expression of the DREB1A, IRO2, and NAC5 transcription factor genes, which are involved in the regulation of stress responses.

conclusionsIn addition to its role as a metabolic fuel, glutamine may also function as a signaling molecule to regulate gene expression in plants. The rapid induction of transcription factor genes suggests that glutamine may efficiently amplify its signal and interact with the other signal transduction pathways to regulate plant growth and stress responses. Thus, glutamine is a functional amino acid that plays important roles in plant nutrition and signal transduction.

Indexed as

Signal TransductionGlutamineNitratesNitrogenOryzaPlant RootsStress, PhysiologicalTranscription FactorsTranscriptomeammonium nitrateGlutamineNitratesNitrogenTranscription Factors

Identifiers

PMID26407850
PMCPMC4582844
OpenAlexW2101102266

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.