Evidence map›Paper›PMID 26405574›Full record

ArticleOncoimmunology2015

Identification of characteristic TRB V usage in HBV-associated HCC by using differential expression profiling analysis.

Yingxin Han, Xing Liu, Yuqi Wang, Xiaolei Wu, Yanfang Guan, Hongmei Li, Xinchun Chen, Boping Zhou, Qing Yuan, Ying Ou and 11 more

Open access · goldAbstract read
In one paragraph

Article in Oncoimmunology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.0field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 43 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Article
  5. Human TCR repertoire in cancer.Cancer medicine · 2024
    Review
  6. Article
  7. Article
  8. T-cell repertoire diversity: friend or foe for protective antitumor response?Journal of experimental & clinical cancer research : CR · 2022
    Review
  9. Article
  10. Human immune repertoire in hepatitis B virus infection.World journal of gastroenterology · 2021
    Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Clonal expansion of bone marrow CD8American journal of cancer research · 2020
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 7 institutions in 4 countries.

Yingxin HanKey Laboratory of Systems Biomedicine (Ministry of Education) and Collaborative Innovation Center of Systems Biomedicine; Shanghai Center for Systems Biomedicine; Shanghai Jiao Tong University; Shanghai, China ; Binhai Genomics Institute; BGI-Tianjin ; Tianjin, China ; Tianjin Translational Genomics Center; BGI-Tianjin ; Tianjin, China.
Xing LiuKey Laboratory of Systems Biomedicine (Ministry of Education) and Collaborative Innovation Center of Systems Biomedicine; Shanghai Center for Systems Biomedicine; Shanghai Jiao Tong University; Shanghai, China.
Yuqi WangBinhai Genomics Institute; BGI-Tianjin ; Tianjin, China ; Tianjin Translational Genomics Center; BGI-Tianjin ; Tianjin, China.
Xiaolei WuBinhai Genomics Institute; BGI-Tianjin ; Tianjin, China ; Tianjin Translational Genomics Center; BGI-Tianjin ; Tianjin, China.
Yanfang GuanBinhai Genomics Institute; BGI-Tianjin ; Tianjin, China ; Tianjin Translational Genomics Center; BGI-Tianjin ; Tianjin, China.
Hongmei LiBinhai Genomics Institute; BGI-Tianjin ; Tianjin, China ; Tianjin Translational Genomics Center; BGI-Tianjin ; Tianjin, China.
Xinchun ChenShenzhen Key Lab. of Infection and Immunity; Shenzhen Third People's Hospital; Guangdong Medical college ; Shenzhen, China.
Boping ZhouShenzhen Key Lab. of Infection and Immunity; Shenzhen Third People's Hospital; Guangdong Medical college ; Shenzhen, China.
Qing YuanKey Laboratory of Systems Biomedicine (Ministry of Education) and Collaborative Innovation Center of Systems Biomedicine; Shanghai Center for Systems Biomedicine; Shanghai Jiao Tong University; Shanghai, China.
Ying OuKey Laboratory of Systems Biomedicine (Ministry of Education) and Collaborative Innovation Center of Systems Biomedicine; Shanghai Center for Systems Biomedicine; Shanghai Jiao Tong University; Shanghai, China.
Renhua WuBinhai Genomics Institute; BGI-Tianjin ; Tianjin, China ; Tianjin Translational Genomics Center; BGI-Tianjin ; Tianjin, China.
Wanqiu HuangTongji Medical College; Huazhong University of Science and Technology ; Wuhan, China.
Yun WangKey Laboratory of Systems Biomedicine (Ministry of Education) and Collaborative Innovation Center of Systems Biomedicine; Shanghai Center for Systems Biomedicine; Shanghai Jiao Tong University; Shanghai, China.
Ming ZhangBinhai Genomics Institute; BGI-Tianjin ; Tianjin, China ; Tianjin Translational Genomics Center; BGI-Tianjin ; Tianjin, China.
Yinxin ZhangBinhai Genomics Institute; BGI-Tianjin ; Tianjin, China ; Tianjin Translational Genomics Center; BGI-Tianjin ; Tianjin, China.
Dongxing ZhuBinhai Genomics Institute; BGI-Tianjin ; Tianjin, China ; Tianjin Translational Genomics Center; BGI-Tianjin ; Tianjin, China.
Hongmei ZhuBinhai Genomics Institute; BGI-Tianjin ; Tianjin, China ; Tianjin Translational Genomics Center; BGI-Tianjin ; Tianjin, China.
Ling YangBinhai Genomics Institute; BGI-Tianjin ; Tianjin, China ; Tianjin Translational Genomics Center; BGI-Tianjin ; Tianjin, China.
Xin YiBinhai Genomics Institute; BGI-Tianjin ; Tianjin, China ; Tianjin Translational Genomics Center; BGI-Tianjin ; Tianjin, China ; BGI-Shenzhen ; Shenzhen, China ; Guangzhou Key Laboratory of Cancer Trans-Omics Research (GZ2012, NO348); BGI-Guangzhou , Guangzhou, China.
Chen HuangDepartment of Nephrology; Xijing Hospital; Fourth Military Medical University ; Xi An, China.
Jian HuangKey Laboratory of Systems Biomedicine (Ministry of Education) and Collaborative Innovation Center of Systems Biomedicine; Shanghai Center for Systems Biomedicine; Shanghai Jiao Tong University; Shanghai, China.
Genomics (United Kingdom) · GBShanghai Jiao Tong University · CNBotswana Geoscience Institute · BWAir Force Medical University · CNGuangdong Medical College · CNHuazhong University of Science and Technology · CNInstitute of Infection and Immunity · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Liver cancer is one of the most common cancers worldwide. CDR3 sequencing-based immune repertoire can be closely associated with cancer prognosis and development. Identifying the specific interaction between the TCR and cellular antigens is important for developing novel immunotherapeutic approaches for the treatment of cancer. The rearranged TCRβ loci amplified using Vβ- and Jβ-specific primers by multi-PCR and sequenced using high-throughput sequencing (HTS) in liver cancers were compared with those of T cells from healthy adult peripheral blood and from adjacent liver tissue. The T-cell repertoires within each tumor show strong similarity to one another but are distinct from those of the circulating T-cell repertoire. In addition, our results demonstrate that there are significant differences in the T-cell repertoires of HCC (hepatocellular carcinoma), ICC (intrahepatic cholangiocarcinoma), and MHC (mixed hepatocellular and cholangiocellular carcinoma). Furthermore, we found that the highly expanded clone (HEC) ratio in blood samples from liver cancer patients differed significantly from those in the blood of healthy adults and hepatitis patients (

Indexed as

hepatocellular carcinomahighly expanded clonehigh-throughput sequencingT cellTCRβ

Identifiers

PMID26405574
PMCPMC4570125
OpenAlexW1899263436

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.