Evidence map›Paper›PMID 26405040›Full record

ArticleThe Journal of biological chemistry2015

Molecular Interactions and Cellular Itinerary of the Yeast RAVE (Regulator of the H+-ATPase of Vacuolar and Endosomal Membranes) Complex.

Anne M Smardon, Negin Dehdar Nasab, Maureen Tarsio, Theodore T Diakov, Patricia M Kane

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 36 citations in OpenAlex.

  1. Review
  2. Article
  3. Interaction of yeast V-ATPase with TLDc protein Rtc5p.bioRxiv : the preprint server for biology · 2025
    Article
  4. Structure of yeast RAVE bound to a partial VProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  5. Tender love and disassembly: How a TLDc domain protein breaks the V-ATPase.BioEssays : news and reviews in molecular, cellular and developmental biology · 2023
    Article
  6. Article
  7. Review
  8. Review
  9. Coordinated conformational changes in the VNature structural & molecular biology · 2022
    Article
  10. Article
  11. The Plant V-ATPase.Frontiers in plant science · 2022
    Review
  12. Review
  13. Regulation and function of V-ATPases in physiology and disease.Biochimica et biophysica acta. Biomembranes · 2020
    Review
  14. Caspase-8 Induces Lysosome-Associated Cell Death in Cancer Cells.Molecular therapy : the journal of the American Society of Gene Therapy · 2020
    Article
  15. Interaction between the yeast RAVE complex and Vph1-containing VThe Journal of biological chemistry · 2020
    Article
  16. Functional reconstitution of vacuolar HThe Journal of biological chemistry · 2019
    Article
  17. Review
  18. A lysosomal proton pump turns on when glucose runs out.The Journal of biological chemistry · 2018
    Article
  19. Article
  20. Breaking up and making up: The secret life of the vacuolar HProtein science : a publication of the Protein Society · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Anne M SmardonFrom the Department of Biochemistry and Molecular Biology, SUNY Upstate Medical University, Syracuse, New York 13210.
Negin Dehdar NasabFrom the Department of Biochemistry and Molecular Biology, SUNY Upstate Medical University, Syracuse, New York 13210.
Maureen TarsioFrom the Department of Biochemistry and Molecular Biology, SUNY Upstate Medical University, Syracuse, New York 13210.
Theodore T DiakovFrom the Department of Biochemistry and Molecular Biology, SUNY Upstate Medical University, Syracuse, New York 13210.
Patricia M KaneFrom the Department of Biochemistry and Molecular Biology, SUNY Upstate Medical University, Syracuse, New York 13210 kanepm@upstate.edu.
SUNY Upstate Medical University · US

Funding

SUBUNIT STRUCTURE/FUNCTION IN VACUOLAR H+ ATPASESR01GM050322 · NIGMS · UPSTATE MEDICAL UNIVERSITY · PI KANE, PATRICIA M · 1994 to 2015
$4.1M
A Skpl-containing Complex Regulating V-ATPase ActivityR01GM063742 · NIGMS · UPSTATE MEDICAL UNIVERSITY · PI KANE, PATRICIA M · 2002 to 2005
$851k
NIGMS NIH HHS R01 GM050322NIGMS NIH HHS R01 GM063742
6 · The paper itself

Abstract

The RAVE complex (regulator of the H(+)-ATPase of vacuolar and endosomal membranes) is required for biosynthetic assembly and glucose-stimulated reassembly of the yeast vacuolar H(+)-ATPase (V-ATPase). Yeast RAVE contains three subunits: Rav1, Rav2, and Skp1. Rav1 is the largest subunit, and it binds Rav2 and Skp1 of RAVE; the E, G, and C subunits of the V-ATPase peripheral V1 sector; and Vph1 of the membrane Vo sector. We identified Rav1 regions required for interaction with its binding partners through deletion analysis, co-immunoprecipitation, two-hybrid assay, and pulldown assays with expressed proteins. We find that Skp1 binding requires sequences near the C terminus of Rav1, V1 subunits E and C bind to a conserved region in the C-terminal half of Rav1, and the cytosolic domain of Vph1 binds near the junction of the Rav1 N- and C-terminal halves. In contrast, Rav2 binds to the N-terminal domain of Rav1, which can be modeled as a double β-propeller. Only the V1 C subunit binds to both Rav1 and Rav2. Using GFP-tagged RAVE subunits in vivo, we demonstrate glucose-dependent association of RAVE with the vacuolar membrane, consistent with its role in glucose-dependent V-ATPase assembly. It is known that V1 subunit C localizes to the V1-Vo interface in assembled V-ATPase complexes and is important in regulated disassembly of V-ATPases. We propose that RAVE cycles between cytosol and vacuolar membrane in a glucose-dependent manner, positioning V1 and V0 subcomplexes and orienting the V1 C subunit to promote assembly.

Indexed as

Binding SitesEndosomal Sorting Complexes Required for TransportEndosomesModels, MolecularProtein Structure, SecondaryProtein Structure, TertiarySaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTwo-Hybrid System TechniquesVacuolar Proton-Translocating ATPasesEndosomal Sorting Complexes Required for TransportSaccharomyces cerevisiae ProteinsVacuolar Proton-Translocating ATPasescell signalingglucoseprotein-protein interactionvacuolar acidificationvacuolar ATPase

Identifiers

PMID26405040
PMCPMC4646003
OpenAlexW2179980862

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.