Evidence map›Paper›PMID 26405033›Full record

ArticleThe Journal of biological chemistry2015

Genomic Survey and Biochemical Analysis of Recombinant Candidate Cyanobacteriochromes Reveals Enrichment for Near UV/Violet Sensors in the Halotolerant and Alkaliphilic Cyanobacterium Microcoleus IPPAS B353.

Sung Mi Cho, Sae Chae Jeoung, Ji-Young Song, Elena V Kupriyanova, Natalia A Pronina, Bong-Woo Lee, Seong-Whan Jo, Beom-Seok Park, Sang-Bong Choi, Ji-Joon Song and 1 more

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Discovery and Engineering of Unique Cyanobacteriochrome GAF Domains.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  2. Article
  3. Cyanobacteriochromes: A Rainbow of Photoreceptors.Annual review of microbiology · 2024
    Review
  4. Red/green cyanobacteriochromes acquire isomerization from phycocyanobilin to phycoviolobilin.Protein science : a publication of the Protein Society · 2024
    Article
  5. Article
  6. Novel cyanobacteriochrome photoreceptor with the second Cys residue showing atypical orange/blue reversible photoconversion.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2023
    Article
  7. Article
  8. Review
  9. Structural basis of the protochromic green/red photocycle of the chromatic acclimation sensor RcaE.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  10. Review
  11. Evolution-inspired design of multicolored photoswitches from a single cyanobacteriochrome scaffold.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Fluorescence Properties of a Novel Cyanobacteriochrome GAF Domain fromInternational journal of molecular sciences · 2018
    Article
  18. Molecular characterization of DThe Journal of biological chemistry · 2018
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Sung Mi ChoDepartment of Biological Sciences, Chungnam National University, Daejeon, 305-764, Korea.
Sae Chae JeoungCenter for Advanced Measurement and Instrumentation, Korea Research Institute of Standards and Science, Daejeon 305-340, Korea.
Ji-Young SongDepartment of Biological Sciences, Chungnam National University, Daejeon, 305-764, Korea.
Elena V KupriyanovaInstitute of Plant Physiology, Russian Academy of Sciences, Botanicheskaya Street 35, Moscow 127276, Russia.
Natalia A ProninaInstitute of Plant Physiology, Russian Academy of Sciences, Botanicheskaya Street 35, Moscow 127276, Russia.
Bong-Woo LeeSeeders Inc., Daejeon, 305-509, Korea.
Seong-Whan JoSeeders Inc., Daejeon, 305-509, Korea.
Beom-Seok ParkThe Agricultural Genome Center, National Academy of Agricultural Science, Rural Development Administration, Wanju 565-851, Korea. Electronic address: yipark@cnu.ac.kr.
Sang-Bong ChoiSchool of Biotechnology and Environmental Engineering, Myongji University, Yongin 449-728, Korea.
Ji-Joon SongDepartment of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon 305-701, Korea.
Youn-Il ParkDepartment of Biological Sciences, Chungnam National University, Daejeon, 305-764, Korea.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cyanobacteriochromes (CBCRs), which are exclusive to and widespread among cyanobacteria, are photoproteins that sense the entire range of near-UV and visible light. CBCRs are related to the red/far-red phytochromes that utilize linear tetrapyrrole (bilin) chromophores. Best characterized from the unicellular cyanobacterium Synechocystis sp. PCC 6803 and the multicellular heterocyst forming filamentous cyanobacteria Nostoc punctiforme ATCC 29133 and Anabaena sp. PCC 7120, CBCRs have been poorly investigated in mat-forming, nonheterocystous cyanobacteria. In this study, we sequenced the genome of one of such species, Microcoleus IPPAS B353 (Microcoleus B353), and identified two phytochromes and seven CBCRs with one or more bilin-binding cGMP-specific phosphodiesterase, adenylyl cyclase and FhlA (GAF) domains. Biochemical and spectroscopic measurements of 23 purified GAF proteins from phycocyanobilin (PCB) producing recombinant Escherichia coli indicated that 13 of these proteins formed near-UV and visible light-absorbing covalent adducts: 10 GAFs contained PCB chromophores, whereas three contained the PCB isomer, phycoviolobilin (PVB). Furthermore, the complement of Microcoleus B353 CBCRs is enriched in near-UV and violet sensors, but lacks red/green and green/red CBCRs that are widely distributed in other cyanobacteria. We hypothesize that enrichment in short wavelength-absorbing CBCRs is critical for acclimation to high-light environments where this organism is found.

Indexed as

Genome, BacterialUltraviolet RaysBacterial ProteinsCyanobacteriaPhotobiologyBacterial ProteinscyanobacteriacyanobacteriochromesgenomicsMicrocoleusnonheterocystous filamentous cyanobacteriumphotobiologyphotoreceptorultraviolet-visible spectroscopy (UV-Vis spectroscopy)

Identifiers

PMID26405033
PMCPMC4653706

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.