Evidence map›Paper›PMID 26404144›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2015

Southwestern Blotting Assay.

Yinshan Jia, Linda Nagore, Harry Jarrett

Open access · greenAbstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact, top 76% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Yinshan JiaDepartment of Chemistry, University of Texas at San Antonio, One UTSA Circle, San Antonio, TX, 78249, USA.
Linda NagoreDepartment of Chemistry, University of Texas at San Antonio, One UTSA Circle, San Antonio, TX, 78249, USA.
Harry JarrettDepartment of Chemistry, University of Texas at San Antonio, One UTSA Circle, San Antonio, TX, 78249, USA. harry.jarrett@utsa.edu.
The University of Texas at San Antonio · US

Funding

UTSA RISE Research Training ProgramR25GM060655 · NIGMS · UNIVERSITY OF TEXAS SAN ANTONIO · PI BAREA-RODRIGUEZ, EDWIN J · 2000 to 2022
$21.6M
POLYNUCLEOTIDE HIGH-PERFORMANCE AFFINITY CHROMATOGRAPHYR01GM043609 · NIGMS · UNIVERSITY OF TEXAS SAN ANTONIO · PI JARRETT, HARRY W · 1989 to 2013
$3.1M
NIGMS NIH HHS GM060655NIGMS NIH HHS R01 GM043609NIGMS NIH HHS R01GM043609NIGMS NIH HHS R25 GM060655
6 · The paper itself

Abstract

Southwestern blotting is a technique used to study DNA-protein interactions. This method detects specific DNA-binding proteins by incubating radiolabeled DNA with a gel blot, washing, and visualizing through autoradiography. A blot resulting from 1-dimensional SDS-PAGE reveals the molecular weight of the binding proteins. To increase separation and determine isoelectric point a 2-dimensional gel can be blotted. Additional dimensions of electrophoresis, such as a gel shift (EMSA), can precede isoelectric focusing and SDS-PAGE to further improve separation. Combined with other techniques, such as mass spectrometry, the DNA-binding protein can be identified.

Indexed as

Blotting, SouthwesternDNADNA-Binding ProteinsElectrophoresis, Gel, Two-DimensionalElectrophoretic Mobility Shift AssayMass SpectrometryTranscription FactorsDNADNA-Binding ProteinsTranscription FactorsDNAImmunoblotsNitrocellulose membraneOligonucleotidePromoterPVDF membraneRegulationResponse elementsSouthwestern blottingTranscription

Identifiers

PMID26404144
PMCPMC4887086
OpenAlexW2415104980

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.