Evidence map›Paper›PMID 26402641›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2016

Comprehensive genetic exploration of skeletal dysplasia using targeted exome sequencing.

Jun-Seok Bae, Nayoung K D Kim, Chung Lee, Sang Cheol Kim, Hey Ran Lee, Hae-Ryong Song, Kun Bo Park, Hyun Woo Kim, Soon Hyuck Lee, Ha Yong Kim and 9 more

Abstract read
PubMed Publisher
In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Genetic and allelic heterogeneity in 248 Indians with skeletal dysplasia.European journal of human genetics : EJHG · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Familial Aggregation of a Novel Missense Variant ofChildren (Basel, Switzerland) · 2022
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Expanding the phenome and variome of skeletal dysplasia.Genetics in medicine : official journal of the American College of Medical Genetics · 2018
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Jun-Seok BaeSamsung Genome Institute, Samsung Medical Center, Seoul, Korea.
Nayoung K D KimSamsung Genome Institute, Samsung Medical Center, Seoul, Korea.
Chung LeeSamsung Genome Institute, Samsung Medical Center, Seoul, Korea.
Sang Cheol KimSamsung Genome Institute, Samsung Medical Center, Seoul, Korea.
Hey Ran LeeDivision of Pediatric Orthopaedics, Seoul National University Children's Hospital, Seoul, Korea.
Hae-Ryong SongDepartment of Orthopaedic Surgery, Korea University Guro Hospital, Seoul, Korea.
Kun Bo ParkDepartment of Orthopaedic Surgery, Inje University Haeundae Hospital, Busan, Korea.ORCID 0000-0002-8839-4870
Hyun Woo KimDepartment of Orthopaedic Surgery, Severance Children's Hospital, Yonsei University College of Medicine, Seoul, Korea.
Soon Hyuck LeeDepartment of Orthopaedic Surgery, Korea University Anam Hospital, Seoul, Korea.
Ha Yong KimDepartment of Orthopaedic Surgery, Eulji University Daejeon Hospital, Daejeon, Korea.ORCID 0000-0003-4949-9212
Soon Chul LeeDepartment of Orthopaedic Surgery, CHA Bundang Medical Center, CHA University School of Medicine, Seongnam, Korea.
Changhoon JeongDepartment of Orthopaedic Surgery, Bucheon St. Mary's Hospital, the Catholic University of Korea, Bucheon, Korea.
Moon Seok ParkDepartment of Orthopaedic Surgery, Seoul National University Bundang Hospital, Seongnam, Korea.
Won Joon YooDivision of Pediatric Orthopaedics, Seoul National University Children's Hospital, Seoul, Korea.ORCID 0000-0001-5225-1440
Chin Youb ChungDepartment of Orthopaedic Surgery, Seoul National University Bundang Hospital, Seongnam, Korea.
In Ho ChoiDivision of Pediatric Orthopaedics, Seoul National University Children's Hospital, Seoul, Korea.
Ok-Hwa KimDepartment of Radiology, Woorisoa Children's Hospital, Seoul, Korea.
Woong-Yang ParkSamsung Genome Institute, Samsung Medical Center, Seoul, Korea.ORCID 0000-0003-4234-0380
Tae-Joon ChoDivision of Pediatric Orthopaedics, Seoul National University Children's Hospital, Seoul, Korea.ORCID 0000-0001-8514-377X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeThe purpose of this study was to evaluate the clinical utility of targeted exome sequencing (TES) as a molecular diagnostic tool for patients with skeletal dysplasia.

methodsA total of 185 patients either diagnosed with or suspected to have skeletal dysplasia were recruited over a period of 3 years. TES was performed for 255 genes associated with the pathogenesis of skeletal dysplasia, and candidate variants were selected using a bioinformatics analysis. All candidate variants were confirmed by Sanger sequencing, correlation with the phenotype, and a cosegregation study in the family.

resultsTES detected "confirmed" or "highly likely" pathogenic sequence variants in 74% (71 of 96) of cases in the assured clinical diagnosis category and 20.3% (13 of 64 cases) of cases in the uncertain clinical diagnosis category. TES successfully detected pathogenic variants in all 25 cases of previously known genotypes. The data also suggested a copy-number variation that led to a molecular diagnosis.

conclusionThis study demonstrates the feasibility of TES for the molecular diagnosis of skeletal dysplasia. However, further confirmation is needed for a final molecular diagnosis, including Sanger sequencing of candidate variants with suspected, poorly captured exons.Genet Med 18 6, 563-569.

Indexed as

Pathology, MolecularDNA Copy Number VariationsExome SequencingExonsFemaleHumansMaleMusculoskeletal AbnormalitiesMutationPedigreePhenotype

Identifiers

PMID26402641

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.