Evidence map›Paper›PMID 26401955›Full record

ArticlePloS one2015

Site-Specific Ser/Thr/Tyr Phosphoproteome of Sinorhizobium meliloti at Stationary Phase.

Tao Liu, Chang Fu Tian, Wen Xin Chen

Abstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Evolutionary Rescue of an EnvironmentalFrontiers in microbiology · 2020
    Article
  6. Article
  7. Goals and Challenges in Bacterial Phosphoproteomics.International journal of molecular sciences · 2019
    Review
  8. Mutation in theGenes · 2018
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Tao LiuState Key Laboratory of Agrobiotechnology, and College of Biological Sciences, China Agricultural University, Beijing, China; Key Laboratory of Soil Microbiology, Ministry of Agriculture, China Agricultural University, Beijing, China; Rhizobium Research Center, China Agricultural University, Beijing, China.
Chang Fu TianState Key Laboratory of Agrobiotechnology, and College of Biological Sciences, China Agricultural University, Beijing, China; Key Laboratory of Soil Microbiology, Ministry of Agriculture, China Agricultural University, Beijing, China; Rhizobium Research Center, China Agricultural University, Beijing, China.
Wen Xin ChenState Key Laboratory of Agrobiotechnology, and College of Biological Sciences, China Agricultural University, Beijing, China; Key Laboratory of Soil Microbiology, Ministry of Agriculture, China Agricultural University, Beijing, China; Rhizobium Research Center, China Agricultural University, Beijing, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sinorhizobium meliloti, a facultative microsymbiont of alfalfa, should fine-tune its cellular processes to live saprophytically in soils characterized with limited nutrients and diverse stresses. In this study, TiO2 enrichment and LC-MS/MS were used to uncover the site-specific Ser/Thr/Tyr phosphoproteome of S. meliloti in minimum medium at stationary phase. There are a total of 96 unique phosphorylated sites, with a Ser/Thr/Tyr distribution of 63:28:5, in 77 proteins. Phosphoproteins identified in S. meliloti showed a wide distribution pattern regarding to functional categories, such as replication, transcription, translation, posttranslational modification, transport and metabolism of amino acids, carbohydrate, inorganic ion, succinoglycan etc. Ser/Thr/Tyr phosphosites identified within the conserved motif in proteins of key cellular function indicate a crucial role of phosphorylation in modulating cellular physiology. Moreover, phosphorylation in proteins involved in processes related to rhizobial adaptation was also discussed, such as those identified in SMa0114 and PhaP2 (polyhydroxybutyrate synthesis), ActR (pH stress and microaerobic adaption), SupA (potassium stress), chaperonin GroEL2 (viability and potentially symbiosis), and ExoP (succinoglycan synthesis and secretion). These Ser/Thr/Tyr phosphosites identified herein would be helpful for our further investigation and understanding of the role of phosphorylation in rhizobial physiology.

Indexed as

Bacterial ProteinsComputational BiologyPhosphoproteinsPhosphorylationProteomeSequence Analysis, ProteinSerineSinorhizobium melilotiSubcellular FractionsTandem Mass SpectrometryThreonineTyrosineBacterial ProteinsPhosphoproteinsProteomeSerineThreonineTyrosine

Identifiers

PMID26401955
PMCPMC4581636

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.