Evidence map›Paper›PMID 26401343›Full record

ArticleCanine genetics and epidemiology2015

A cultured approach to canine urothelial carcinoma: molecular characterization of five cell lines.

S G Shapiro, D W Knapp, Matthew Breen

Open access · goldAbstract read
In one paragraph

Article in Canine genetics and epidemiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.7field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

S G ShapiroDepartment of Molecular Biomedical Sciences, College of Veterinary Medicine, North Carolina State University, 1060 William Moore Drive, Raleigh, NC 27607 USA.
D W KnappDepartment of Veterinary Clinical Sciences, Purdue University, College of Veterinary Medicine, West Lafayette, IN USA ; Purdue University Center for Cancer Research, West Lafayette, IN USA.
Matthew BreenDepartment of Molecular Biomedical Sciences, College of Veterinary Medicine, North Carolina State University, 1060 William Moore Drive, Raleigh, NC 27607 USA ; Center for Comparative Medicine and Translational Research, North Carolina State University, Raleigh, NC USA ; Center for Human Health and the Environment, North Carolina State University, Raleigh, NC USA ; Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC USA.
North Carolina State University · USPurdue University West Lafayette · US

Funding

Interdisciplinary Biomedical Research Training ProgramT35OD011070 · OD · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI Ronald Hak Long Li · 2012 to 2026
$1.1M
Interdisciplinary Biomedical Research Training ProgramT35RR025837 · NCRR · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI JONES, SAMUEL L · 2009 to 2011
$103k
NCRR NIH HHS T35 RR025837NIH HHS T35 OD011070
6 · The paper itself

Abstract

backgroundUrothelial carcinoma (UC), also known as transitional cell carcinoma (TCC), of the bladder is the most common neoplasm affecting the canine urogenital system. To facilitate study of the disease in vitro, cell line models have been established from primary tumor biopsies. Their resemblance to the primary disease, however, has not been well defined. In the present study, we evaluated five canine UC cell lines via oligonucleotide array comparative genomic hybridization (oaCGH), fluorescence in situ hybridization (FISH), and gene expression analysis.

resultsComparison of genome wide DNA copy number profiles of the cell lines with primary biopsy specimens revealed redundancies in genomic aberrations, indicating that the cell lines retain the gross genomic architecture of primary tumors. As in the primary tumors, gain of canine chromosomes 13 and 36 and loss of chromosome 19 were among the most frequent aberrations evident in the cell lines. FISH analysis revealed chromosome structural aberrations, including tandem duplications, bi-armed chromosomes, and chromosome fusions, suggesting genome instability during neoplastic transformation. Gene expression profiling highlighted numerous differentially expressed genes, including many previously shown as dysregulated in primary canine UC and human bladder cancer. Pathway enrichment analysis emphasized pathways suspected to be at the crux of UC pathogenesis, including xenobiotic and lipid compound metabolism.

conclusionsThese data support valid use of the canine UC cell lines evaluated by confirming they provide an accurate and practical means to interrogate the UC at a molecular level. Moreover, the cell lines may provide a valuable model for furthering our understanding of aberrant metabolic pathways in UC development.

Indexed as

Bladder cancerCell linesChromosomeLipid metabolismTransitional cell carcinomaUrothelial carcinoma

Identifiers

PMID26401343
PMCPMC4579363
OpenAlexW2123029957

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.