Evidence map›Paper›PMID 26401328›Full record

ArticleCanine genetics and epidemiology2014

Non-synonymous genetic variation in exonic regions of canine Toll-like receptors.

Anna Cuscó, Armand Sánchez, Laura Altet, Lluís Ferrer, Olga Francino

Open access · goldAbstract read
In one paragraph

Article in Canine genetics and epidemiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Anna CuscóMolecular Genetics Veterinary Service. Veterinary School, Universitat Autònoma de Barcelona, Barcelona, Spain ; Vetgenomics. Ed Eureka. Parc de Recerca UAB, Barcelona, Spain.
Armand SánchezMolecular Genetics Veterinary Service. Veterinary School, Universitat Autònoma de Barcelona, Barcelona, Spain.
Laura AltetVetgenomics. Ed Eureka. Parc de Recerca UAB, Barcelona, Spain.
Lluís FerrerDepartment of Clinical Sciences, Cummings School of Veterinary Medicine, Tufts University, North Grafton, MA USA.
Olga FrancinoMolecular Genetics Veterinary Service. Veterinary School, Universitat Autònoma de Barcelona, Barcelona, Spain.
Universitat Autònoma de Barcelona · ESCenter for Research in Agricultural Genomics · ESTufts University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundToll-like receptors (TLRs) are pattern recognition receptors (PRRs) considered to be the primary sensors of pathogens in innate immunity. Genetic variants could be associated to differences in breed innate immune response to pathogens and thus to susceptibility to infections or autoimmune diseases. There is therefore great interest in the characterization of canine TLRs.

resultsPolymorphisms in canine TLRs have been characterized by massive sequencing after enrichment of their exonic regions. DNAs from 335 dogs (seven different breeds) and 100 wolves (two different populations) were used in pools. The ratio of SNP discovery was 76.5% (in relation to CanFam 3.1); 155 out of 204 variants identified were new. Functional annotation identified 64 non-synonymous variants (43 new), 73 synonymous variants (56 new) and 67 modifier variants (57 new). 12 out of 64 non-synonymous variants are breed or wolf specific. TLR5 has been found to be the most polymorphic among canine TLRs. Finally, a TaqMan OpenArray® plate containing 64 SNPs with a possible functional effect in the protein (4 frameshifts and 60 non-synonymous codons) has been designed and validated.

conclusionsNon-synonymous genetic variation has been characterized in exonic regions of canine Toll-like Receptors. The TaqMan OpenArray® plate developed to capture the individual variability that affects protein function will allow high-throughput genotyping either to study association to infection susceptibility or even TLR evolution in the canine genome.

Indexed as

CanineDogInnate immunityNon-synonymous SNPsPolymorphismSNPsTLRsToll-like receptor

Identifiers

PMID26401328
PMCPMC4579382
OpenAlexW2036821765

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.