Evidence map›Paper›PMID 26401315›Full record

ArticleScientific data2015

The proteome of mouse vestibular hair bundles over development.

Jocelyn F Krey, Nicholas E Sherman, Erin D Jeffery, Dongseok Choi, Peter G Barr-Gillespie

Open access · goldAbstract readDataset
In one paragraph

Article in Scientific data, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
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  12. Article
  13. Molecular Composition of Vestibular Hair Bundles.Cold Spring Harbor perspectives in medicine · 2019
    Review
  14. Article
  15. Article
  16. ELMOD1 Stimulates ARF6-GTP Hydrolysis to Stabilize Apical Structures in Developing Vestibular Hair Cells.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2018
    Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Jocelyn F KreyOregon Hearing Research Center & Vollum Institute, Oregon Health & Science University , Portland 97239, OR, USA.
Nicholas E ShermanW.M. Keck Biomedical Mass Spectrometry Lab, University of Virginia , Charlottesville 22908, VA, USA.
Erin D JefferyW.M. Keck Biomedical Mass Spectrometry Lab, University of Virginia , Charlottesville 22908, VA, USA.
Dongseok ChoiDepartment of Public Health & Preventive Medicine, Oregon Health & Science University , Portland 97239, OR, USA.
Peter G Barr-GillespieOregon Hearing Research Center & Vollum Institute, Oregon Health & Science University , Portland 97239, OR, USA.ORCID 0000-0002-9787-5860
Oregon Health & Science University · USUniversity of Virginia · US

Funding

Oregon Clinical and Translational Research InstituteUL1TR000128 · NCATS · OREGON HEALTH & SCIENCE UNIVERSITY · PI ELLISON, DAVID H · 2012 to 2015
$28.7M
Hair-Bundle ProteinsR01DC002368 · NIDCD · OREGON HEALTH & SCIENCE UNIVERSITY · PI Peter Gordon Barr-Gillespie · 1994 to 2026
$11.3M
PORTLAND AREA COMMUNICATION RESEARCH CORE CENTERP30DC005983 · NIDCD · OREGON HEALTH & SCIENCE UNIVERSITY · PI BARR-GILLESPIE, PETER GORDON · 2003 to 2017
$9.0M
Hair Bundle Structure and DynamicsR01DC011034 · NIDCD · OREGON HEALTH & SCIENCE UNIVERSITY · PI BARR-GILLESPIE, PETER GORDON · 2010 to 2024
$6.4M
Global analysis of bundle protein transport in mouse vestibular hair cellsF32DC012455 · NIDCD · OREGON HEALTH & SCIENCE UNIVERSITY · PI KREY, JOCELYN F · 2012 to 2013
$106k
NCATS NIH HHS UL1 TR000128NIDCD NIH HHS F32 DC012455NIDCD NIH HHS P30 DC005983NIDCD NIH HHS R01 DC002368NIDCD NIH HHS R01 DC011034
6 · The paper itself

Abstract

Development of the vertebrate hair bundle is a precisely orchestrated event that culminates in production of a tightly ordered arrangement of actin-rich stereocilia and a single axonemal kinocilium. To understand how the protein composition of the bundle changes during development, we isolated bundles from young (postnatal days P4-P6) and mature (P21-P25) mouse utricles using the twist-off method, then characterized their constituent proteins using liquid-chromatography tandem mass spectrometry with data-dependent acquisition. Using MaxQuant and label-free quantitation, we measured relative abundances of proteins in both bundles and in the whole utricle; comparison of protein abundance between the two fractions allows calculation of enrichment in bundles. These data, which are available via ProteomeXchange with identifier PXD002167, will be useful for examining the proteins present in mammalian vestibular bundles and how their concentrations change over development.

Indexed as

Hair Cells, VestibularProteomeVestibule, LabyrinthAnimalsMiceTandem Mass SpectrometryProteome

Identifiers

PMID26401315
PMCPMC4570149
OpenAlexW2394793831

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.