Evidence map›Paper›PMID 26401099›Full record

ArticleBioinformatics and biology insights2015

BioImg.org: A Catalog of Virtual Machine Images for the Life Sciences.

Martin Dahlö, Frédéric Haziza, Aleksi Kallio, Eija Korpelainen, Erik Bongcam-Rudloff, Ola Spjuth

Open access · goldAbstract read
In one paragraph

Article in Bioinformatics and biology insights, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.7field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 10 citations in OpenAlex.

  1. Towards reproducible computational drug discovery.Journal of cheminformatics · 2020
    Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Martin DahlöSNIC-UPPMAX, Department of Information Technology, Uppsala University, Uppsala, Sweden. ; Science for Life Laboratory, Uppsala University, Uppsala, Sweden. ; Department of Pharmaceutical Biosciences, Uppsala University, Uppsala, Sweden.
Frédéric HazizaSNIC-UPPMAX, Department of Information Technology, Uppsala University, Uppsala, Sweden.
Aleksi KallioCSC - IT Center for Science Ltd., Espoo, Finland.
Eija KorpelainenCSC - IT Center for Science Ltd., Espoo, Finland.
Erik Bongcam-RudloffSLU-Global Bioinformatics Centre, Department of Animal Breeding and Genetics, Swedish University of Agricultural Sciences, Uppsala, Sweden.
Ola SpjuthSNIC-UPPMAX, Department of Information Technology, Uppsala University, Uppsala, Sweden. ; Science for Life Laboratory, Uppsala University, Uppsala, Sweden. ; Department of Pharmaceutical Biosciences, Uppsala University, Uppsala, Sweden.
CSC - IT Center for Science (Finland) · FIScience for Life Laboratory · SESwedish University of Agricultural Sciences · SEUppsala University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Virtualization is becoming increasingly important in bioscience, enabling assembly and provisioning of complete computer setups, including operating system, data, software, and services packaged as virtual machine images (VMIs). We present an open catalog of VMIs for the life sciences, where scientists can share information about images and optionally upload them to a server equipped with a large file system and fast Internet connection. Other scientists can then search for and download images that can be run on the local computer or in a cloud computing environment, providing easy access to bioinformatics environments. We also describe applications where VMIs aid life science research, including distributing tools and data, supporting reproducible analysis, and facilitating education. BioImg.org is freely available at: https://bioimg.org.

Indexed as

cataloguecloud computingcontainersoftware repositoryvirtual appliancevirtual machine image

Identifiers

PMID26401099
PMCPMC4567039
OpenAlexW2128556733

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.