Evidence map›Paper›PMID 26401016›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Genomic alterations in BCL2L1 and DLC1 contribute to drug sensitivity in gastric cancer.

Hansoo Park, Sung-Yup Cho, Hyerim Kim, Deukchae Na, Jee Yun Han, Jeesoo Chae, Changho Park, Ok-Kyoung Park, Seoyeon Min, Jinjoo Kang and 11 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 73 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. RNA NAdvanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Deregulation of apoptotic proteins by induction ofIranian journal of basic medical sciences · 2023
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. A novel genomic classification system of gastric cancer via integrating multidimensional genomic characteristics.Gastric cancer : official journal of the International Gastric Cancer Association and the Japanese Gastric Cancer Association · 2021
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 2 institutions in 3 countries.

Hansoo ParkThe Jackson Laboratory for Genomic Medicine, Farmington, CT 06032;
Sung-Yup ChoDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul 110-799, Korea;
Hyerim KimThe Jackson Laboratory for Genomic Medicine, Farmington, CT 06032;
Deukchae NaDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul 110-799, Korea;
Jee Yun HanDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul 110-799, Korea;
Jeesoo ChaeDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul 110-799, Korea;
Changho ParkDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul 110-799, Korea;
Ok-Kyoung ParkDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul 110-799, Korea;
Seoyeon MinDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul 110-799, Korea;
Jinjoo KangDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul 110-799, Korea;
Boram ChoiCancer Research Institute, Seoul National University College of Medicine, Seoul 110-799, Korea;
Jimin MinCancer Research Institute, Seoul National University College of Medicine, Seoul 110-799, Korea;
Jee Young KwonThe Jackson Laboratory for Genomic Medicine, Farmington, CT 06032;
Yun-Suhk SuhDepartment of Surgery, Seoul National University College of Medicine, Seoul 110-799, Korea;
Seong-Ho KongDepartment of Surgery, Seoul National University College of Medicine, Seoul 110-799, Korea;
Hyuk-Joon LeeCancer Research Institute, Seoul National University College of Medicine, Seoul 110-799, Korea; Department of Surgery, Seoul National University College of Medicine, Seoul 110-799, Korea;
Edison T LiuThe Jackson Laboratory for Genomic Medicine, Farmington, CT 06032;
Jong-Il KimDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul 110-799, Korea;
Sunghoon KimMedicinal Bioconvergence Research Center, Seoul National University, Seoul 151-742, Korea; Department of Molecular Medicine and Biopharmaceutical Sciences, Seoul National University, Seoul 151-742, Korea.
Han-Kwang YangCancer Research Institute, Seoul National University College of Medicine, Seoul 110-799, Korea; Department of Surgery, Seoul National University College of Medicine, Seoul 110-799, Korea; Charles.Lee@jax.org hkyang@snu.ac.kr.
Charles LeeThe Jackson Laboratory for Genomic Medicine, Farmington, CT 06032; Department of Biomedical Sciences, Seoul National University College of Medicine, Seoul 110-799, Korea; Charles.Lee@jax.org hkyang@snu.ac.kr.
Seoul National University · KRJackson Laboratory · US

Funding

Shared Resource ManagementP30CA034196 · NCI · JACKSON LABORATORY · PI William Carl Skarnes · 1985 to 2026
$61.9M
NCI NIH HHS P30 CA034196
6 · The paper itself

Abstract

Gastric cancer (GC) is the third leading cause of cancer-related deaths worldwide. Recent high-throughput analyses of genomic alterations revealed several driver genes and altered pathways in GC. However, therapeutic applications from genomic data are limited, largely as a result of the lack of druggable molecular targets and preclinical models for drug selection. To identify new therapeutic targets for GC, we performed array comparative genomic hybridization (aCGH) of DNA from 103 patients with GC for copy number alteration (CNA) analysis, and whole-exome sequencing from 55 GCs from the same patients for mutation profiling. Pathway analysis showed recurrent alterations in the Wnt signaling [APC, CTNNB1, and DLC1 (deleted in liver cancer 1)], ErbB signaling (ERBB2, PIK3CA, and KRAS), and p53 signaling/apoptosis [TP53 and BCL2L1 (BCL2-like 1)] pathways. In 18.4% of GC cases (19/103), amplification of the antiapoptotic gene BCL2L1 was observed, and subsequently a BCL2L1 inhibitor was shown to markedly decrease cell viability in BCL2L1-amplified cell lines and in similarly altered patient-derived GC xenografts, especially when combined with other chemotherapeutic agents. In 10.9% of cases (6/55), mutations in DLC1 were found and were also shown to confer a growth advantage for these cells via activation of Rho-ROCK signaling, rendering these cells more susceptible to a ROCK inhibitor. Taken together, our study implicates BCL2L1 and DLC1 as potential druggable targets for specific subsets of GC cases.

Indexed as

AgedAged, 80 and overAnimalsAntineoplastic Combined Chemotherapy Protocolsbcl-X ProteinCell Line, TumorCell SurvivalComparative Genomic HybridizationDNA Copy Number VariationsExomeFemaleGenome-Wide Association StudyGTPase-Activating ProteinsHumansInterleukin Receptor Common gamma SubunitMaleBCL2L1 protein, humanbcl-X ProteinDLC1 protein, humanGTPase-Activating ProteinsIl2rg protein, mouseInterleukin Receptor Common gamma SubunitTumor Suppressor Proteinscopy number alterationdruggable targetgastric cancerpatient-derived xenograftwhole-exome sequencing

Identifiers

PMID26401016
PMCPMC4603466
OpenAlexW2194596668

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.