Evidence map›Paper›PMID 26400160›Full record

ArticleNucleic acids research2015

PARN deadenylase is involved in miRNA-dependent degradation of TP53 mRNA in mammalian cells.

Xiaokan Zhang, Emral Devany, Michael R Murphy, Galina Glazman, Mirjana Persaud, Frida E Kleiman

Abstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

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  19. The Profiling and Role of miRNAs in Diabetes Mellitus.Journal of diabetes and clinical research · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Xiaokan ZhangChemistry Department, Belfer Research Building, Hunter College and Graduate Center, City University of New York, New York, NY 10021, USA.
Emral DevanyChemistry Department, Belfer Research Building, Hunter College and Graduate Center, City University of New York, New York, NY 10021, USA Department of Biological Sciences, Kingsborough Community College, City University of New York, 2001 Oriental Boulevard, Brooklyn, NY 11235, USA.
Michael R MurphyChemistry Department, Belfer Research Building, Hunter College and Graduate Center, City University of New York, New York, NY 10021, USA.
Galina GlazmanChemistry Department, Belfer Research Building, Hunter College and Graduate Center, City University of New York, New York, NY 10021, USA.
Mirjana PersaudChemistry Department, Belfer Research Building, Hunter College and Graduate Center, City University of New York, New York, NY 10021, USA.
Frida E KleimanChemistry Department, Belfer Research Building, Hunter College and Graduate Center, City University of New York, New York, NY 10021, USA fkleiman@hunter.cuny.edu.

Funding

Mechanisms of Response to DNA Damage Nuclear FactorsSC1GM083806 · NIGMS · HUNTER COLLEGE · PI KLEIMAN, FRIDA E · 2008 to 2011
$1.4M
Role of nucleolin in regulating mRNA stability during DNA damage response (DDR)R21CA175794 · NCI · BROOKLYN COLLEGE · PI KLEIMAN, FRIDA E, SAXENA, ANJANA DEEPAK · 2013 to 2014
$365k
NCI NIH HHS 1R21CA175794NIGMS NIH HHS SC1GM083806
6 · The paper itself

Abstract

mRNA deadenylation is under the control of cis-acting regulatory elements, which include AU-rich elements (AREs) and microRNA (miRNA) targeting sites, within the 3' untranslated region (3' UTRs) of eukaryotic mRNAs. Deadenylases promote miRNA-induced mRNA decay through their interaction with miRNA-induced silencing complex (miRISC). However, the role of poly(A) specific ribonuclease (PARN) deadenylase in miRNA-dependent mRNA degradation has not been elucidated. Here, we present evidence that not only ARE- but also miRNA-mediated pathways are involved in PARN-mediated regulation of the steady state levels of TP53 mRNA, which encodes the tumor suppressor p53. Supporting this, Argonaute-2 (Ago-2), the core component of miRISC, can coexist in complexes with PARN resulting in the activation of its deadenylase activity. PARN regulates TP53 mRNA stability through not only an ARE but also an adjacent miR-504/miR-125b-targeting site in the 3' UTR. More importantly, we found that miR-125b-loaded miRISC contributes to the specific recruitment of PARN to TP53 mRNA, and that can be reverted by the ARE-binding protein HuR. Together, our studies provide new insights into the role of PARN in miRNA-dependent control of mRNA decay and into the mechanisms behind the regulation of p53 expression.

Indexed as

3' Untranslated RegionsArgonaute ProteinsCell LineELAV-Like Protein 1Gene Expression RegulationHumansMicroRNAsRibonucleasesRNA, MessengerTumor Suppressor Protein p533' Untranslated RegionsAGO2 protein, humanArgonaute ProteinsELAV-Like Protein 1MicroRNAsMIRN125 microRNA, humanmRNA deadenylaseRibonucleasesRNA, MessengerTumor Suppressor Protein p53

Identifiers

PMID26400160
PMCPMC4678859

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.