ArticlePloS one2015
A ddRAD Based Linkage Map of the Cultivated Strawberry, Fragaria xananassa.
Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
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Who cites it
29 citing papers in PubMed.
- The PERPETUAL FLOWERING locus: Necessary but insufficient for genomic prediction of runnerless and other asexual reproduction phenotypes in strawberry.The plant genome · 2025Article
- Nutritional and Amino Acid Composition of Scenedesmus sp. Cultivated Under Various Light Intensities.Current microbiology · 2025Article
- Limited genetic diversity found among genotypes of the Entada landrace (Frontiers in plant science · 2024Article
- The devastating oomycete phytopathogen Phytophthora cactorum: Insights into its biology and molecular features.Molecular plant pathology · 2023Review
- Transposon signatures of allopolyploid genome evolution.Nature communications · 2023Article
- A High-Density SNP Genetic Map Construction Using ddRAD-Seq and Mapping of Capsule Shattering Trait in Sesame.Frontiers in plant science · 2021Article
- Chromosome Level Assembly of Homozygous Inbred Line 'Wongyo 3115' Facilitates the Construction of a High-Density Linkage Map and Identification of QTLs Associated With Fruit Firmness in Octoploid Strawberry (Frontiers in plant science · 2021Article
- ddRAD-seq derived genome-wide SNPs, high density linkage map and QTLs for fruit quality traits in strawberry (3 Biotech · 2020Article
- Mapping a double flower phenotype-associated gene DcAP2L in Dianthus chinensis.Journal of experimental botany · 2020Article
- A roadmap for research in octoploid strawberry.Horticulture research · 2020Review
- Southern Species From the Biodiversity Hotspot of Central Chile: A Source of Color, Aroma, and Metabolites for Global Agriculture and Food Industry in a Scenario of Climate Change.Frontiers in plant science · 2020Review
- High density linkage map construction and QTL mapping for runner production in allo-octoploid strawberry Fragaria × ananassa based on ddRAD-seq derived SNPs.Scientific reports · 2019Article
- Origin and evolution of the octoploid strawberry genome.Nature genetics · 2019Article
- Genome Synteny Has Been Conserved Among the Octoploid Progenitors of Cultivated Strawberry Over Millions of Years of Evolution.Frontiers in plant science · 2019Article
- Quantitative trait loci controllingHorticulture research · 2019Article
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- A physical and genetic map ofGenome research · 2019Article
- Identification of powdery mildew resistance QTL in strawberry (Fragaria × ananassa).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018Article
- Consensus genetic linkage map construction and QTL mapping for plant height-related traits in linseed flax (Linum usitatissimum L.).BMC plant biology · 2018Article
Corrections and comments
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The cultivated strawberry (Fragaria ×ananassa Duch.) is an allo-octoploid considered difficult to disentangle genetically due to its four relatively similar sub-genomic chromosome sets. This has been alleviated by the recent release of the strawberry IStraw90 whole genome genotyping array. However, array resolution relies on the genotypes used in the array construction and may be of limited general use. SNP detection based on reduced genomic sequencing approaches has the potential of providing better coverage in cases where the studied genotypes are only distantly related from the SNP array's construction foundation. Here we have used double digest restriction-associated DNA sequencing (ddRAD) to identify SNPs in a 145 seedling F1 hybrid population raised from the cross between the cultivars Sonata (♀) and Babette (♂). A linkage map containing 907 markers which spanned 1,581.5 cM across 31 linkage groups representing the 28 chromosomes of the species. Comparing the physical span of the SNP markers with the F. vesca genome sequence, the linkage groups resolved covered 79% of the estimated 830 Mb of the F. × ananassa genome. Here, we have developed the first linkage map for F. × ananassa using ddRAD and show that this technique and other related techniques are useful tools for linkage map development and downstream genetic studies in the octoploid strawberry.
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