Evidence map›Paper›PMID 26397813›Full record

ArticlePloS one2015

Genome-Wide Characterization and Expression Analysis of Major Intrinsic Proteins during Abiotic and Biotic Stresses in Sweet Orange (Citrus sinensis L. Osb.).

Cristina de Paula Santos Martins, Andresa Muniz Pedrosa, Dongliang Du, Luana Pereira Gonçalves, Qibin Yu, Frederick G Gmitter, Marcio Gilberto Cardoso Costa

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
11.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 98 citations in OpenAlex.

  1. Article
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  8. Osmolytes andFrontiers in plant science · 2024
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  15. The aquaporin gene PvXIP1;2 conferring drought resistance identified by GWAS at seedling stage in common bean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Frontiers in plant science · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Cristina de Paula Santos MartinsCenter for Biotechnology and Genetics, Biological Sciences Department, State University of Santa Cruz, Ilhéus, Bahia, Brazil; Citrus Research and Education Center, Department of Horticultural Sciences, University of Florida, Lake Alfred, Florida, United States of America.
Andresa Muniz PedrosaCenter for Biotechnology and Genetics, Biological Sciences Department, State University of Santa Cruz, Ilhéus, Bahia, Brazil.
Dongliang DuCitrus Research and Education Center, Department of Horticultural Sciences, University of Florida, Lake Alfred, Florida, United States of America.
Luana Pereira GonçalvesCenter for Biotechnology and Genetics, Biological Sciences Department, State University of Santa Cruz, Ilhéus, Bahia, Brazil.
Qibin YuCitrus Research and Education Center, Department of Horticultural Sciences, University of Florida, Lake Alfred, Florida, United States of America.
Frederick G GmitterCitrus Research and Education Center, Department of Horticultural Sciences, University of Florida, Lake Alfred, Florida, United States of America.
Marcio Gilberto Cardoso CostaCenter for Biotechnology and Genetics, Biological Sciences Department, State University of Santa Cruz, Ilhéus, Bahia, Brazil.
Universidade Estadual de Santa Cruz · BRFlorida Department of Citrus · USUniversity of Florida · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The family of aquaporins (AQPs), or major intrinsic proteins (MIPs), includes integral membrane proteins that function as transmembrane channels for water and other small molecules of physiological significance. MIPs are classified into five subfamilies in higher plants, including plasma membrane (PIPs), tonoplast (TIPs), NOD26-like (NIPs), small basic (SIPs) and unclassified X (XIPs) intrinsic proteins. This study reports a genome-wide survey of MIP encoding genes in sweet orange (Citrus sinensis L. Osb.), the most widely cultivated Citrus spp. A total of 34 different genes encoding C. sinensis MIPs (CsMIPs) were identified and assigned into five subfamilies (CsPIPs, CsTIPs, CsNIPs, CsSIPs and CsXIPs) based on sequence analysis and also on their phylogenetic relationships with clearly classified MIPs of Arabidopsis thaliana. Analysis of key amino acid residues allowed the assessment of the substrate specificity of each CsMIP. Gene structure analysis revealed that the CsMIPs possess an exon-intron organization that is highly conserved within each subfamily. CsMIP loci were precisely mapped on every sweet orange chromosome, indicating a wide distribution of the gene family in the sweet orange genome. Investigation of their expression patterns in different tissues and upon drought and salt stress treatments, as well as with 'Candidatus Liberibacter asiaticus' infection, revealed a tissue-specific and coordinated regulation of the different CsMIP isoforms, consistent with the organization of the stress-responsive cis-acting regulatory elements observed in their promoter regions. A special role in regulating the flow of water and nutrients is proposed for CsTIPs and CsXIPs during drought stress, and for most CsMIPs during salt stress and the development of HLB disease. These results provide a valuable reference for further exploration of the CsMIPs functions and applications to the genetic improvement of both abiotic and biotic stress tolerance in citrus.

Indexed as

Genome, PlantStress, PhysiologicalAquaporinsArabidopsisChromosomes, PlantCitrus sinensisDroughtsGenetic LociPhylogenyPlant ProteinsPromoter Regions, GeneticAquaporinsPlant Proteins

Identifiers

PMID26397813
PMCPMC4580632
OpenAlexW2340716977

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.