Evidence map›Paper›PMID 26396982›Full record

ArticleVirusdisease2015

Genetic characterization and phylogenetic analysis of host-range genes of Camelpox virus isolates from India.

B C Bera, S Barua, K Shanmugasundaram, T Anand, T Riyesh, R K Vaid, N Virmani, S Kundu, N K Yadav, P Malik and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Virusdisease, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.4field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 6 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

B C BeraVeterinary Type Culture Collection, National Research Centre on Equines, Sirsa Road, Hisar, Haryana India.
S BaruaVeterinary Type Culture Collection, National Research Centre on Equines, Sirsa Road, Hisar, Haryana India.
K ShanmugasundaramVeterinary Type Culture Collection, National Research Centre on Equines, Sirsa Road, Hisar, Haryana India.
T AnandVeterinary Type Culture Collection, National Research Centre on Equines, Sirsa Road, Hisar, Haryana India.
T RiyeshVeterinary Type Culture Collection, National Research Centre on Equines, Sirsa Road, Hisar, Haryana India.
R K VaidVeterinary Type Culture Collection, National Research Centre on Equines, Sirsa Road, Hisar, Haryana India.
N VirmaniNational Research Centre on Equines, Sirsa Road, Hisar, India.
S KunduVeterinary Type Culture Collection, National Research Centre on Equines, Sirsa Road, Hisar, Haryana India.
N K YadavVeterinary Type Culture Collection, National Research Centre on Equines, Sirsa Road, Hisar, Haryana India.
P MalikVeterinary Type Culture Collection, National Research Centre on Equines, Sirsa Road, Hisar, Haryana India.
R K SinghIndian Veterinary Research Institute, Izatnagar, Bareilly, U.P. India.
Indian Veterinary Research Institute · INNational Research Centre on Equines · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Camelpox virus (CMLV), a close variant of variola virus (VARV) infects camels worldwide. The zoonotic infections reported from India signify the need to study the host-range genes-responsible for host tropism. We report sequence and phylogenetic analysis of five host-range genes: cytokine response modifier B (crmB), chemokine binding protein (ckbp), viral schlafen-like (v-slfn), myxomavirus T4-like (M-T4-like) and b5r of CMLVs isolated from outbreaks in India. Comparative analysis revealed that these genes are conserved among CMLVs and shared 94.5-100 % identity at both nucleotide (nt) and amino acid (aa) levels. All genes showed identity (59.3-98.4 %) with cowpox virus (CPXV) while three genes-crmB, ckbp and b5r showed similarity (92-96.5 %) with VARVs at both nt and aa levels. Interestingly, three consecutive serine residue insertions were observed in CKBP protein of CMLV-Delhi09 isolate which was similar to CPXV-BR and VACVs, besides five point mutations (K53Q, N67I, F84S, A127T and E182G) were also similar to zoonotic OPXVs. Further, few inconsistent point mutation(s) were also observed in other gene(s) among Indian CMLVs. These indicate that different strains of CMLVs are circulating in India and these mutations could play an important role in adaptation of CMLVs in humans. The phylogeny revealed clustering of all CMLVs together except CMLV-Delhi09 which grouped separately due to the presence of specific point mutations. However, the topology of the concatenated phylogeny showed close evolutionary relationship of CMLV with VARV and TATV followed by CPXV-RatGer09/1 from Germany. The availability of this genetic information will be useful in unveiling new strategies to control emerging zoonotic poxvirus infections.

Indexed as

Camelpox virusCMLVConcatenated phylogenetic treeHost-range geneOrthopoxvirus

Identifiers

PMID26396982
PMCPMC4571595
OpenAlexW1611460794

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.