Evidence map›Paper›PMID 26396486›Full record

ArticleMolecular vision2015

Identification of novel PIKFYVE gene mutations associated with Fleck corneal dystrophy.

Jessica A Gee, Ricardo F Frausto, Duk-Won D Chung, Chulaluck Tangmonkongvoragul, Derek J Le, Cynthia Wang, Jonathan Han, Anthony J Aldave

Abstract readCase Reports
In one paragraph

Article in Molecular vision, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. A PI(3,5)PNature communications · 2026
    Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Roles of PIKfyve in multiple cellular pathways.Current opinion in cell biology · 2022
    Review
  7. Article
  8. Corneal dystrophies.Nature reviews. Disease primers · 2020
    Review
  9. PI5P and PI(3,5)PCell structure and function · 2017
    Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Jessica A GeeThe Stein Eye Institute, David Geffen School of Medicine at UCLA, Los Angeles, CA.
Ricardo F FraustoThe Stein Eye Institute, David Geffen School of Medicine at UCLA, Los Angeles, CA.
Duk-Won D ChungThe Stein Eye Institute, David Geffen School of Medicine at UCLA, Los Angeles, CA.
Chulaluck TangmonkongvoragulThe Stein Eye Institute, David Geffen School of Medicine at UCLA, Los Angeles, CA.
Derek J LeThe Stein Eye Institute, David Geffen School of Medicine at UCLA, Los Angeles, CA.
Cynthia WangThe Stein Eye Institute, David Geffen School of Medicine at UCLA, Los Angeles, CA.
Jonathan HanThe Stein Eye Institute, David Geffen School of Medicine at UCLA, Los Angeles, CA.
Anthony J AldaveThe Stein Eye Institute, David Geffen School of Medicine at UCLA, Los Angeles, CA.

Funding

Vision Research Core at UCLAP30EY000331 · NEI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Gregory Darin Field, DAVID S WILLIAMS · 1985 to 2026
$16.8M
Identification and Characterization of the Genetic Basis of PPCDR01EY022082 · NEI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ALDAVE, ANTHONY JOHN · 2013 to 2017
$1.9M
NEI NIH HHS P30 EY000331NEI NIH HHS P30EY000331NEI NIH HHS R01 EY022082NEI NIH HHS R01EY022082
6 · The paper itself

Abstract

purposeTo report the identification of a novel frameshift mutation and copy number variation (CNV) in PIKFYVE in two probands with fleck corneal dystrophy (FCD).

methodsSlit-lamp examination was performed to identify characteristic features of FCD. After genomic DNA was collected, PCR amplification and automated sequencing of all 41 exons of PIKFYVE was performed. Using genomic DNA, quantitative PCR (qPCR) was performed to detect CNVs within PIKFYVE.

resultsIn the first FCD proband, numerous panstromal punctate opacities were observed in each of the proband's corneas, consistent with the diagnosis of FCD. Screening of PIKFYVE demonstrated a novel heterozygous frameshift mutation in exon 19, c.3151dupA, which is predicted to encode for a truncated PIKFYVE protein, p.(Asp1052Argfs*18). This variant was identified in an affected sister but not in the proband's unaffected mother or brother or 200 control chromosomes. The second FCD proband presented with bilateral, discrete, punctate, grayish-white stromal opacities. Exonic screening of PIKFYVE revealed no causative variant. However, CNV analysis demonstrated the hemizygous deletion of exons 15 and 16.

conclusionsWe report a novel heterozygous frameshift mutation (c.3151dupA) and a CNV in PIKFYVE, representing the first CNV and the fifth frameshift mutation associated with FCD.

Indexed as

Base SequenceDNA Copy Number VariationsFrameshift MutationSequence DeletionAdultCorneaCorneal Dystrophies, HereditaryDNA Mutational AnalysisExonsFemaleGene ExpressionHeterozygoteHumansMolecular Sequence DataPhosphatidylinositol 3-KinasesPhosphatidylinositol 3-KinasesPIKFYVE protein, human

Identifiers

PMID26396486
PMCPMC4575904

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.