Evidence map›Paper›PMID 26395553›Full record

ArticleEuropean journal of human genetics : EJHG2016

RET and EDNRB mutation screening in patients with Hirschsprung disease: Functional studies and its implications for genetic counseling.

Titis Widowati, Shamiram Melhem, Suryono Y Patria, Bianca M de Graaf, Richard J Sinke, Martijn Viel, Jos Dijkhuis, Ahmad H Sadewa, Rochadi Purwohardjono, Yati Soenarto and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Novel CausativeJournal of pediatric genetics · 2022
    Article
  4. Article
  5. Review
  6. GermlineFrontiers in endocrinology · 2021
    Article
  7. Article
  8. Article
  9. Functional Studies on NovelFrontiers in genetics · 2019
    Article
  10. Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Titis WidowatiDepartment of Pediatric, Faculty of Medicine, Universitas Gadjah Mada, Prof.Dr Sardjito Hospital, Yogyakarta, Indonesia.
Shamiram MelhemDepartment of Clinical Genetic, Erasmus Medical Center, Rotterdam, The Netherlands.
Suryono Y PatriaDepartment of Pediatric, Faculty of Medicine, Universitas Gadjah Mada, Prof.Dr Sardjito Hospital, Yogyakarta, Indonesia.
Bianca M de GraafDepartment of Clinical Genetic, Erasmus Medical Center, Rotterdam, The Netherlands.
Richard J SinkeDepartment of Genetic, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
Martijn VielDepartment of Genetic, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
Jos DijkhuisDepartment of Genetic, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
Ahmad H SadewaDepartment of Biochemistry, Faculty of Medicine, Universitas Gadjah Mada, Yogyakarta, Indonesia.
Rochadi PurwohardjonoDepartment of Pediatric Surgery, Faculty of Medicine, Universitas Gadjah Mada, Prof.Dr Sardjito Hospital, Yogyakarta, Indonesia.
Yati SoenartoDepartment of Pediatric, Faculty of Medicine, Universitas Gadjah Mada, Prof.Dr Sardjito Hospital, Yogyakarta, Indonesia.
Robert Mw HofstraDepartment of Clinical Genetic, Erasmus Medical Center, Rotterdam, The Netherlands.
Yunia SribudianiDepartment of Biochemistry and Molecular Biology, Faculty of Medicine, Universitas Padjadjaran, Bandung, Indonesia.
Universitas Gadjah Mada · IDErasmus MC · NLUniversity Medical Center Groningen · NLPadjadjaran University · ID

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hirschsprung disease (HSCR) is a major cause of chronic constipation in children. HSCR can be caused by germline mutations in RET and EDNRB. Defining causality of the mutations identified is difficult and almost exclusively based on in silico predictions. Therefore, the reported frequency of pathogenic mutations might be overestimated. We combined mutation analysis with functional assays to determine the frequencies of proven pathogenic RET and EDNRB mutations in HSCR. We sequenced RET and EDNRB in 57 HSCR patients. The identified RET-coding variants were introduced into RET constructs and these were transfected into HEK293 cells to determine RET phosphorylation and activation via ERK. An exon trap experiment was performed to check a possible splice-site mutation. We identified eight rare RET-coding variants, one possible splice-site variant, but no rare EDNRB variants. Western blotting showed that three coding variants p.(Pr270Leu), p.(Ala756Val) and p.(Tyr1062Cys) resulted in lower activation of RET. Moreover, only two RET variants (p.(Ala756Val) and p.(Tyr1062Cys)) resulted in reduced ERK activation. Splice-site assays on c.1880-11A>G could not confirm its pathogenicity. Our data suggest that indeed almost half of the identified rare variants are proven pathogenic and that, hence, functional studies are essential for proper genetic counseling.

Indexed as

Mutation, MissenseAdolescentChildChild, PreschoolExtracellular Signal-Regulated MAP KinasesFemaleGenetic CounselingHEK293 CellsHirschsprung DiseaseHumansInfantMalePhosphorylationProtein Processing, Post-TranslationalProto-Oncogene Proteins c-retReceptor, Endothelin BEDNRB protein, humanExtracellular Signal-Regulated MAP KinasesProto-Oncogene Proteins c-retReceptor, Endothelin BRET protein, human

Identifiers

PMID26395553
PMCPMC4867453
OpenAlexW2215965559

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.