Evidence map›Paper›PMID 26395002›Full record

ArticleGenome medicine2015

Mutational landscapes of tongue carcinoma reveal recurrent mutations in genes of therapeutic and prognostic relevance.

Andre Luiz Vettore, Kalpana Ramnarayanan, Gregory Poore, Kevin Lim, Choon Kiat Ong, Kie Kyon Huang, Hui Sun Leong, Fui Teen Chong, Tony Kiat-Hon Lim, Weng Khong Lim and 12 more

Open access · goldAbstract read
In one paragraph

Article in Genome medicine, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed, 2 pooled it
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 2 syntheses or guidelines pooled it, 96 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 6 institutions in 3 countries.

Andre Luiz VettoreCancer Stem Cell Biology Program, Duke-NUS Graduate Medical School, 8 College Road, Singapore, 169857, Singaore. andre.vettore@gmail.com.
Kalpana RamnarayananCancer Stem Cell Biology Program, Duke-NUS Graduate Medical School, 8 College Road, Singapore, 169857, Singaore. kalpana.ramnarayanan@duke-nus.edu.sg.
Gregory PooreCancer Stem Cell Biology Program, Duke-NUS Graduate Medical School, 8 College Road, Singapore, 169857, Singaore. gregory.poore@duke.edu.
Kevin LimCancer Stem Cell Biology Program, Duke-NUS Graduate Medical School, 8 College Road, Singapore, 169857, Singaore. kevin.lim@duke-nus.edu.sg.
Choon Kiat OngCancer Stem Cell Biology Program, Duke-NUS Graduate Medical School, 8 College Road, Singapore, 169857, Singaore. cmrock@nccs.com.sg.
Kie Kyon HuangCancer Stem Cell Biology Program, Duke-NUS Graduate Medical School, 8 College Road, Singapore, 169857, Singaore. kiekyon.huang@gmail.com.
Hui Sun LeongCancer Therapeutics Research Laboratory, National Cancer Centre, 11 Hospital Drive, Singapore, 169610, Singapore. hui.sun.leong@nccs.com.sg.
Fui Teen ChongCancer Therapeutics Research Laboratory, National Cancer Centre, 11 Hospital Drive, Singapore, 169610, Singapore. Chong.F.T@nccs.com.sg.
Tony Kiat-Hon LimDepartment of Pathology, Singapore General Hospital, Outram Road, Singapore, 169608, Singapore. lim.kiat.hon@sgh.com.sg.
Weng Khong LimCancer Stem Cell Biology Program, Duke-NUS Graduate Medical School, 8 College Road, Singapore, 169857, Singaore. wengkhong.lim@duke-nus.edu.sg.
Ioana CutcutacheCancer Stem Cell Biology Program, Duke-NUS Graduate Medical School, 8 College Road, Singapore, 169857, Singaore. ioana.cutcutache@duke-nus.edu.sg.
John R McphersonCancer Stem Cell Biology Program, Duke-NUS Graduate Medical School, 8 College Road, Singapore, 169857, Singaore. john.mcpherson@duke-nus.edu.sg.
Yuka SuzukiCancer Stem Cell Biology Program, Duke-NUS Graduate Medical School, 8 College Road, Singapore, 169857, Singaore. yuka.suzuki@duke-nus.edu.sg.
Shenli ZhangCancer Stem Cell Biology Program, Duke-NUS Graduate Medical School, 8 College Road, Singapore, 169857, Singaore. shenli.zhang@duke-nus.edu.sg.
Thakshayeni SkanthakumarDepartment of Surgical Oncology, National Cancer Centre, 11 Hospital Drive, Singapore, 169610, Singapore. thakshayeni@nccs.com.sg.
Weining WangDepartment of Surgical Oncology, National Cancer Centre, 11 Hospital Drive, Singapore, 169610, Singapore. wang.weining.88@gmail.com.
Daniel S W TanCancer Therapeutics Research Laboratory, National Cancer Centre, 11 Hospital Drive, Singapore, 169610, Singapore. Daniel.Tan.S.W@nccs.com.sg.
Byoung Chul ChoCancer Stem Cell Biology Program, Duke-NUS Graduate Medical School, 8 College Road, Singapore, 169857, Singaore. cbc1971@yuhs.ac.
Bin Tean TehCancer Stem Cell Biology Program, Duke-NUS Graduate Medical School, 8 College Road, Singapore, 169857, Singaore. teh.bin.tean@singhealth.com.sg.
Steve RozenCancer Stem Cell Biology Program, Duke-NUS Graduate Medical School, 8 College Road, Singapore, 169857, Singaore. steve.rozen@duke-nus.edu.sg.
Patrick TanCancer Stem Cell Biology Program, Duke-NUS Graduate Medical School, 8 College Road, Singapore, 169857, Singaore. gmstanp@duke-nus.edu.sg.
N Gopalakrishna IyerCancer Stem Cell Biology Program, Duke-NUS Graduate Medical School, 8 College Road, Singapore, 169857, Singaore. gopaliyer@nccs.com.sg.
Duke-NUS Medical School · SGNational Cancer Centre Singapore · SGDuke University Hospital · USNational University of Singapore · SGSingapore General Hospital · SGYonsei University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCarcinoma of the oral tongue (OTSCC) is the most common malignancy of the oral cavity, characterized by frequent recurrence and poor survival. The last three decades has witnessed a change in the OTSCC epidemiological profile, with increasing incidence in younger patients, females and never-smokers. Here, we sought to characterize the OTSCC genomic landscape and to determine factors that may delineate the genetic basis of this disease, inform prognosis and identify targets for therapeutic intervention.

methodsSeventy-eight cases were subjected to whole-exome (n = 18) and targeted deep sequencing (n = 60).

resultsWhile the most common mutation was in TP53, the OTSCC genetic landscape differed from previously described cohorts of patients with head and neck tumors: OTSCCs demonstrated frequent mutations in DST and RNF213, while alterations in CDKN2A and NOTCH1 were significantly less frequent. Despite a lack of previously reported NOTCH1 mutations, integrated analysis showed enrichments of alterations affecting Notch signaling in OTSCC. Importantly, these Notch pathway alterations were prognostic on multivariate analyses. A high proportion of OTSCCs also presented with alterations in drug targetable and chromatin remodeling genes. Patients harboring mutations in actionable pathways were more likely to succumb from recurrent disease compared with those who did not, suggesting that the former should be considered for treatment with targeted compounds in future trials.

conclusionsOur study defines the Asian OTSCC mutational landscape, highlighting the key role of Notch signaling in oral tongue tumorigenesis. We also observed somatic mutations in multiple therapeutically relevant genes, which may represent candidate drug targets in this highly lethal tumor type.

Indexed as

AdultAgedAged, 80 and overAsian PeopleCarcinoma, Squamous CellChromatinFemaleHumansMaleMiddle AgedMutationPrognosisReceptors, NotchSequence Analysis, DNASingaporeTongue NeoplasmsChromatinReceptors, Notch

Identifiers

PMID26395002
PMCPMC4580363
OpenAlexW2129373351

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.