Evidence map›Paper›PMID 26394845›Full record

ArticleBMC plant biology2015

Genetic control of pear rootstock-induced dwarfing and precocity is linked to a chromosomal region syntenic to the apple Dw1 loci.

Mareike Knäbel, Adam P Friend, John W Palmer, Robert Diack, Claudia Wiedow, Peter Alspach, Cecilia Deng, Susan E Gardiner, D Stuart Tustin, Robert Schaffer and 2 more

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
5.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 47 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. A MADS-box gene-induced early flowering pear (Frontiers in plant science · 2023
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Antioxidant and the Dwarfing Candidate Gene of "Nantongxiaofangshi" (Oxidative medicine and cellular longevity · 2019
    Article
  14. Article
  15. Integrated high-density consensus genetic map of Pyrus and anchoring of the 'Bartlett' v1.0 (Pyrus communis) genome.DNA research : an international journal for rapid publication of reports on genes and genomes · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Mareike KnäbelThe New Zealand Institute for Plant & Food Research Limited (Plant & Food Research), Fitzherbert Science Centre, Batchelar Road, Palmerston North, 4474, New Zealand. Mareike.Knaebel@plantandfood.co.nz.
Adam P FriendPlant & Food Research, Motueka Research Centre, 55 Old Mill Road, RD3, Motueka, 7198, New Zealand. Adam.Friend@plantandfood.co.nz.
John W PalmerPlant & Food Research, Motueka Research Centre, 55 Old Mill Road, RD3, Motueka, 7198, New Zealand. John.Palmer@plantandfood.co.nz.
Robert DiackPlant & Food Research, Motueka Research Centre, 55 Old Mill Road, RD3, Motueka, 7198, New Zealand. Robert.Diack@plantandfood.co.nz.
Claudia WiedowThe New Zealand Institute for Plant & Food Research Limited (Plant & Food Research), Fitzherbert Science Centre, Batchelar Road, Palmerston North, 4474, New Zealand. Claudia.Wiedow@plantandfood.co.nz.
Peter AlspachPlant & Food Research, Motueka Research Centre, 55 Old Mill Road, RD3, Motueka, 7198, New Zealand. Peter.Alspach@plantandfood.co.nz.
Cecilia DengPlant & Food Research, Mount Albert Research Centre, 120 Mt Albert Road, Sandringham, Auckland, 1025, New Zealand. Cecilia.Deng@plantandfood.co.nz.
Susan E GardinerThe New Zealand Institute for Plant & Food Research Limited (Plant & Food Research), Fitzherbert Science Centre, Batchelar Road, Palmerston North, 4474, New Zealand. Sue.Gardiner@plantandfood.co.nz.
D Stuart TustinPlant & Food Research, Hawke's Bay Research Centre, Cnr Crosses and St George's Roads, Havelock North, 4130, New Zealand. Stuart.Tustin@plantandfood.co.nz.
Robert SchafferSchool of Biological Sciences, University of Auckland, Thomas Building 110, 3a Symonds Street, Auckland Central, 1010, New Zealand. Robert.Schaffer@plantandfood.co.nz.
Toshi FosterThe New Zealand Institute for Plant & Food Research Limited (Plant & Food Research), Fitzherbert Science Centre, Batchelar Road, Palmerston North, 4474, New Zealand. Toshi.Foster@plantandfood.co.nz.
David ChagnéThe New Zealand Institute for Plant & Food Research Limited (Plant & Food Research), Fitzherbert Science Centre, Batchelar Road, Palmerston North, 4474, New Zealand. David.Chagne@plantandfood.co.nz.
Plant & Food Research · NZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe vigour and precocity of trees highly influences their efficiency in commercial production. In apple, dwarfing rootstocks allow high-density plantings while their precocious flowering enables earlier fruit production. Currently, there is a lack of pear (Pyrus communis L.) rootstocks that are equivalent to the high yielding apple rootstock 'M9'. For the efficient breeding of new Pyrus rootstocks it is crucial to understand the genetic determinants of vigour control and precocity. In this study we used quantitative trait loci (QTLs) analysis to identify genetic loci associated with the desired traits, using a segregating population of 405 F1 P. communis seedlings from a cross between 'Old Home' and 'Louise Bonne de Jersey' (OHxLBJ). The seedlings were grafted as rootstocks with 'Doyenne du Comice' scions and comprehensively phenotyped over four growing seasons for traits related to tree architecture and flowering, in order to describe the growth of the scions.

resultsA high density single nucleotide polymorphism (SNP)-based genetic map comprising 597 polymorphic pear and 113 apple markers enabled the detection of QTLs influencing expression of scion vigour and precocity located on linkage groups (LG)5 and LG6 of 'Old Home'. The LG5 QTL maps to a position that is syntenic to the apple 'Malling 9' ('M9') Dw1 locus at the upper end of LG5. An allele of a simple sequence repeat (SSR) associated with apple Dw1 segregated with dwarfing and precocity in pear and was identified in other pear germplasm accessions. The orthology of the vigour-controlling LG5 QTL between apple and pear raises the possibility that the dwarfing locus Dw1 arose before the divergence of apple and pear, and might therefore be present in other Rosaceae species.

conclusionWe report the first QTLs associated with vigour control and flowering traits in pear rootstocks. Orthologous loci were found to control scion growth and precocity in apple and pear rootstocks. The application of our results may assist in the breeding process of a pear rootstock that confers both vigour control and precocity to the grafted scion cultivar.

Indexed as

Polymorphism, Single NucleotideQuantitative Trait LociSyntenyChromosome MappingGenetic MarkersMalusPlant RootsPyrusGenetic Markers

Identifiers

PMID26394845
PMCPMC4580296
OpenAlexW2128355704

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.