Evidence map›Paper›PMID 26394222›Full record

ArticlePloS one2015

Metabolic Characteristics of a Glucose-Utilizing Shewanella oneidensis Strain Grown under Electrode-Respiring Conditions.

Gen Nakagawa, Atsushi Kouzuma, Atsumi Hirose, Takuya Kasai, Gen Yoshida, Kazuya Watanabe

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 45 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Reconstruction of a Genome-Scale Metabolic Network forFrontiers in bioengineering and biotechnology · 2022
    Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Roles of d-Lactate Dehydrogenases in the Anaerobic Growth ofApplied and environmental microbiology · 2019
    Article
  10. Article
  11. Article
  12. CRP Regulates D-Lactate Oxidation inFrontiers in microbiology · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Gen NakagawaSchool of Life Sciences, Tokyo University of Pharmacy and Life Sciences, Tokyo, Japan.
Atsushi KouzumaSchool of Life Sciences, Tokyo University of Pharmacy and Life Sciences, Tokyo, Japan.
Atsumi HiroseSchool of Life Sciences, Tokyo University of Pharmacy and Life Sciences, Tokyo, Japan.
Takuya KasaiSchool of Life Sciences, Tokyo University of Pharmacy and Life Sciences, Tokyo, Japan.
Gen YoshidaSchool of Life Sciences, Tokyo University of Pharmacy and Life Sciences, Tokyo, Japan.
Kazuya WatanabeSchool of Life Sciences, Tokyo University of Pharmacy and Life Sciences, Tokyo, Japan.
Tokyo University of Pharmacy and Life Sciences · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In bioelectrochemical systems, the electrode potential is an important parameter affecting the electron flow between electrodes and microbes and microbial metabolic activities. Here, we investigated the metabolic characteristics of a glucose-utilizing strain of engineered Shewanella oneidensis under electrode-respiring conditions in electrochemical reactors for gaining insight into how metabolic pathways in electrochemically active bacteria are affected by the electrode potential. When an electrochemical reactor was operated with its working electrode poised at +0.4 V (vs. an Ag/AgCl reference electrode), the engineered S. oneidensis strain, carrying a plasmid encoding a sugar permease and glucose kinase of Escherichia coli, generated current by oxidizing glucose to acetate and produced D-lactate as an intermediate metabolite. However, D-lactate accumulation was not observed when the engineered strain was grown with a working electrode poised at 0 V. We also found that transcription of genes involved in pyruvate and D-lactate metabolisms was upregulated at a high electrode potential compared with their transcription at a low electrode potential. These results suggest that the carbon catabolic pathway of S. oneidensis can be modified by controlling the potential of a working electrode in an electrochemical bioreactor.

Indexed as

Energy MetabolismAcetatesBacteriological TechniquesBioreactorsElectrochemical TechniquesElectrodesEscherichia coli ProteinsGene Expression Regulation, BacterialGenetic EngineeringGlucoseLactatesMembrane Transport ProteinsMetabolic Networks and PathwaysOxidation-ReductionPhosphotransferasesReverse Transcriptase Polymerase Chain ReactionAcetatesEscherichia coli ProteinsGlucoseLactatesMembrane Transport ProteinsPhosphotransferases

Identifiers

PMID26394222
PMCPMC4579138
OpenAlexW2341162861

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.