Evidence map›Paper›PMID 26393353›Full record

ArticlePloS one2015

FXN Promoter Silencing in the Humanized Mouse Model of Friedreich Ataxia.

Yogesh K Chutake, Whitney N Costello, Christina C Lam, Aniruddha C Parikh, Tamara T Hughes, Michael G Michalopulos, Mark A Pook, Sanjay I Bidichandani

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.0field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 18 citations in OpenAlex.

  1. Inhibition of Rho-Associated Kinases ROCK1 and ROCK2 as a Therapeutic Strategy to Reactivate the RepressedThe Journal of neuroscience : the official journal of the Society for Neuroscience · 2025
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  5. A new FRDA mouse model [Frontiers in neuroscience · 2023
    Article
  6. Article
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  8. Article
  9. Molecular Mechanisms and Therapeutics for the GAA·TTC Expansion Disease Friedreich Ataxia.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2019
    Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Translating HDAC inhibitors in Friedreich's ataxia.Expert opinion on orphan drugs · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Yogesh K ChutakeDepartment of Pediatrics, University of Oklahoma College of Medicine, Oklahoma City, OK 73104, United States of America.
Whitney N CostelloDepartment of Pediatrics, University of Oklahoma College of Medicine, Oklahoma City, OK 73104, United States of America.
Christina C LamDepartment of Pediatrics, University of Oklahoma College of Medicine, Oklahoma City, OK 73104, United States of America.
Aniruddha C ParikhDepartment of Pediatrics, University of Oklahoma College of Medicine, Oklahoma City, OK 73104, United States of America.
Tamara T HughesDepartment of Pediatrics, University of Oklahoma College of Medicine, Oklahoma City, OK 73104, United States of America.
Michael G MichalopulosDepartment of Pediatrics, University of Oklahoma College of Medicine, Oklahoma City, OK 73104, United States of America.
Mark A PookAtaxia Research Group, Division of Biosciences, Department of Life Sciences, College of Health & Life Sciences, Brunel University London, Uxbridge, UB8 3PH, United Kingdom.
Sanjay I BidichandaniDepartment of Pediatrics, University of Oklahoma College of Medicine, Oklahoma City, OK 73104, United States of America; Department of Biochemistry & Molecular Biology, University of Oklahoma College of Medicine, Oklahoma City, OK 73104, United States of America.
University of Oklahoma · USBrunel University of London · GB

Funding

Tracking and Evaluation CoreU54GM104938 · NIGMS · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI TIMOTHY M VANWAGONER · 2013 to 2026
$68.2M
RNA-induced transcriptional gene silencing in Friedreich ataxiaR01NS072418 · NINDS · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI BIDICHANDANI, SANJAY I · 2010 to 2014
$1.2M
NIGMS NIH HHS U54 GM104938NINDS NIH HHS R01 NS072418
6 · The paper itself

Abstract

backgroundFriedreich ataxia is caused by an expanded GAA triplet-repeat sequence in intron 1 of the FXN gene that results in epigenetic silencing of the FXN promoter. This silencing mechanism is seen in patient-derived lymphoblastoid cells but it remains unknown if it is a widespread phenomenon affecting multiple cell types and tissues. METHODOLOGY / PRINCIPAL

findingsThe humanized mouse model of Friedreich ataxia (YG8sR), which carries a single transgenic insert of the human FXN gene with an expanded GAA triplet-repeat in intron 1, is deficient for FXN transcript when compared to an isogenic transgenic mouse lacking the expanded repeat (Y47R). We found that in YG8sR the deficiency of FXN transcript extended both upstream and downstream of the expanded GAA triplet-repeat, suggestive of deficient transcriptional initiation. This pattern of deficiency was seen in all tissues tested, irrespective of whether they are known to be affected or spared in disease pathogenesis, in both neuronal and non-neuronal tissues, and in cultured primary fibroblasts. FXN promoter function was directly measured via metabolic labeling of newly synthesized transcripts in fibroblasts, which revealed that the YG8sR mouse was significantly deficient in transcriptional initiation compared to the Y47R mouse. CONCLUSIONS / SIGNIFICANCE: Deficient transcriptional initiation accounts for FXN transcriptional deficiency in the humanized mouse model of Friedreich ataxia, similar to patient-derived cells, and the mechanism underlying promoter silencing in Friedreich ataxia is widespread across multiple cell types and tissues.

Indexed as

AnimalsCells, CulturedCpG IslandsDisease Models, AnimalDNA MethylationFibroblastsFrataxinFriedreich AtaxiaGene SilencingHumansIntronsIron-Binding ProteinsMiceMice, TransgenicPromoter Regions, GeneticReal-Time Polymerase Chain ReactionFrataxinIron-Binding Proteins

Identifiers

PMID26393353
PMCPMC4579136
OpenAlexW2277130776

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.