Evidence map›Paper›PMID 26392530›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Competition and allostery govern substrate selectivity of cyclooxygenase-2.

Michelle M Mitchener, Daniel J Hermanson, Erin M Shockley, H Alex Brown, Craig W Lindsley, Jeff Reese, Carol A Rouzer, Carlos F Lopez, Lawrence J Marnett

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.4field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 31 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Michelle M MitchenerA. B. Hancock Memorial Laboratory for Cancer Research, Vanderbilt University School of Medicine, Nashville, TN 37232; Department of Chemistry, Vanderbilt University School of Medicine, Nashville, TN 37232; The Vanderbilt Institute of Chemical Biology, Vanderbilt University School of Medicine, Nashville, TN 37232; Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, TN 37232;
Daniel J HermansonA. B. Hancock Memorial Laboratory for Cancer Research, Vanderbilt University School of Medicine, Nashville, TN 37232; Department of Chemistry, Vanderbilt University School of Medicine, Nashville, TN 37232; The Vanderbilt Institute of Chemical Biology, Vanderbilt University School of Medicine, Nashville, TN 37232; Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, TN 37232;
Erin M ShockleyThe Vanderbilt Institute of Chemical Biology, Vanderbilt University School of Medicine, Nashville, TN 37232; Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, TN 37232; Department of Cancer Biology, Vanderbilt University School of Medicine, Nashville, TN 37232; Center for Quantitative Sciences, Vanderbilt University School of Medicine, Nashville, TN 37232;
H Alex BrownThe Vanderbilt Institute of Chemical Biology, Vanderbilt University School of Medicine, Nashville, TN 37232; Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, TN 37232; Department of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37232; Department of Pharmacology, Vanderbilt University School of Medicine, Nashville, TN 37232;
Craig W LindsleyDepartment of Chemistry, Vanderbilt University School of Medicine, Nashville, TN 37232; The Vanderbilt Institute of Chemical Biology, Vanderbilt University School of Medicine, Nashville, TN 37232; Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, TN 37232; Department of Pharmacology, Vanderbilt University School of Medicine, Nashville, TN 37232;
Jeff ReeseDepartment of Pediatrics, Vanderbilt University School of Medicine, Nashville, TN 37232; Department of Cell and Developmental Biology, Vanderbilt University School of Medicine, Nashville, TN 37232;
Carol A RouzerA. B. Hancock Memorial Laboratory for Cancer Research, Vanderbilt University School of Medicine, Nashville, TN 37232; The Vanderbilt Institute of Chemical Biology, Vanderbilt University School of Medicine, Nashville, TN 37232; Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, TN 37232;
Carlos F LopezThe Vanderbilt Institute of Chemical Biology, Vanderbilt University School of Medicine, Nashville, TN 37232; Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, TN 37232; Department of Cancer Biology, Vanderbilt University School of Medicine, Nashville, TN 37232; Center for Quantitative Sciences, Vanderbilt University School of Medicine, Nashville, TN 37232; Department of Biomedical Informatics, Vanderbilt University School of Medicine, Nashville, TN 37232; Department of Biomedical Engineering, Vanderbilt University School of Medicine, Nashville, TN 37232; Vanderbilt University Center for Structural Biology, Vanderbilt University School of Medicine, Nashville, TN 37232.
Lawrence J MarnettA. B. Hancock Memorial Laboratory for Cancer Research, Vanderbilt University School of Medicine, Nashville, TN 37232; Department of Chemistry, Vanderbilt University School of Medicine, Nashville, TN 37232; The Vanderbilt Institute of Chemical Biology, Vanderbilt University School of Medicine, Nashville, TN 37232; Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, TN 37232; Department of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37232; Department of Pharmacology, Vanderbilt University School of Medicine, Nashville, TN 37232; larry.marnett@vanderbilt.edu.
Vanderbilt University · US

Funding

TRAINING PROGRAM IN ENVIRONMENTAL TOXICOLOGYT32ES007028 · NIEHS · VANDERBILT UNIVERSITY · PI F PETER Guengerich, Fiona Edith Harrison · 1985 to 2026
$15.7M
THE PHARMACOLOGY OF INHIBITORS OF HEME PROTEIN-CATALYZED LIPID PEROXIDATIONP50GM015431 · NIGMS · VANDERBILT UNIVERSITY · PI CAPRIOLI, RICHARD M · 1985 to 2010
$15.0M
Therapeutic Modulation of Endothelial Cell TetrahydrobiopterinP01GM015431 · NIGMS · VANDERBILT UNIVERSITY · PI ROBERTS, II, L JACKSON · 2011 to 2015
$9.5M
Chemistry-Biology Interface Training GrantT32GM065086 · NIGMS · VANDERBILT UNIVERSITY · PI BACHMANN, BRIAN O, SULIKOWSKI, GARY ALLEN · 2002 to 2022
$7.0M
FUNCTIONAL ANALYSIS OF CYCLOOXYGENASE 2R01CA089450 · NCI · VANDERBILT UNIVERSITY · PI MARNETT, LAWRENCE J. · 2001 to 2016
$6.3M
Phenotype Transitions in Small Cell Lung CancerU01CA215845 · NCI · VANDERBILT UNIVERSITY · PI LOPEZ, CARLOS FEDERICO, QUARANTA, VITO · 2017 to 2021
$2.8M
Studies of Receptor Mediated Signal Transduction Processes in Mammalian Cancer BiK22CA151918 · NCI · VANDERBILT UNIVERSITY · PI LOPEZ, CARLOS FEDERICO · 2011 to 2013
$396k
NCI NIH HHS CA089450NCI NIH HHS K22 CA151918NCI NIH HHS K22CA151918NCI NIH HHS R01 CA089450NCI NIH HHS U01 CA215845NIEHS NIH HHS T32 ES007028NIGMS NIH HHS GM15431NIGMS NIH HHS P01 GM015431NIGMS NIH HHS P50 GM015431NIGMS NIH HHS T32 GM065086
6 · The paper itself

Abstract

Cyclooxygenase-2 (COX-2) oxygenates arachidonic acid (AA) and its ester analog, 2-arachidonoylglycerol (2-AG), to prostaglandins (PGs) and prostaglandin glyceryl esters (PG-Gs), respectively. Although the efficiency of oxygenation of these substrates by COX-2 in vitro is similar, cellular biosynthesis of PGs far exceeds that of PG-Gs. Evidence that the COX enzymes are functional heterodimers suggests that competitive interaction of AA and 2-AG at the allosteric site of COX-2 might result in differential regulation of the oxygenation of the two substrates when both are present. Modulation of AA levels in RAW264.7 macrophages uncovered an inverse correlation between cellular AA levels and PG-G biosynthesis. In vitro kinetic analysis using purified protein demonstrated that the inhibition of 2-AG oxygenation by high concentrations of AA far exceeded the inhibition of AA oxygenation by high concentrations of 2-AG. An unbiased systems-based mechanistic model of the kinetic data revealed that binding of AA or 2-AG at the allosteric site of COX-2 results in a decreased catalytic efficiency of the enzyme toward 2-AG, whereas 2-AG binding at the allosteric site increases COX-2's efficiency toward AA. The results suggest that substrates interact with COX-2 via multiple potential complexes involving binding to both the catalytic and allosteric sites. Competition between AA and 2-AG for these sites, combined with differential allosteric modulation, gives rise to a complex interplay between the substrates, leading to preferential oxygenation of AA.

Indexed as

AlgorithmsAllosteric RegulationAllosteric SiteAnimalsArachidonic AcidArachidonic AcidsBinding, CompetitiveCatalytic DomainCell LineComputer SimulationCyclooxygenase 2EndocannabinoidsGlyceridesKineticsMacrophagesMiceArachidonic AcidArachidonic AcidsCyclooxygenase 2EndocannabinoidsGlyceridesglyceryl 2-arachidonateProstaglandinsZymosanallosteric regulationBayesian inferencechemical kineticscyclooxygenaseendocannabinoids

Identifiers

PMID26392530
PMCPMC4603459
OpenAlexW1883558819

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.