Evidence map›Paper›PMID 26391902›Full record

ArticleEuropean biophysics journal : EBJ2016

Investigation of the free energy profiles of amantadine and rimantadine in the AM2 binding pocket.

Hung Van Nguyen, Hieu Thanh Nguyen, Ly Thi Le

Abstract read
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In one paragraph

Article in European biophysics journal : EBJ, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.2field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Hung Van NguyenLife Science Laboratory, Institute for Computational Science and Technology, Ho Chi Minh City, Vietnam.
Hieu Thanh NguyenLife Science Laboratory, Institute for Computational Science and Technology, Ho Chi Minh City, Vietnam.
Ly Thi LeLife Science Laboratory, Institute for Computational Science and Technology, Ho Chi Minh City, Vietnam. ly.le@hcmiu.edu.vn.
Institute for Computational Science and Technology · VN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The purpose of this work was to study the mechanism of drug resistance of M2 channel proteins by analyzing the interactions between the drugs amantadine and rimantadine and M2 channel proteins (including the wild type and the three mutants V27A, S31N, and G34A) and the drug binding pathways, by use of a computational approach. Our results showed that multiple drug-binding sites were present in the M2 channel, and the trajectory of the drugs through the M2 channel was determined. A novel method was developed to investigate of free energy profiles of the ligand-protein complexes. Our work provides a new explanation of the large amount of experimental data on drug efficacy.

Indexed as

Molecular Docking SimulationAmantadineAmino Acid SequenceAmino Acid SubstitutionBinding SitesMolecular Sequence DataProtein BindingRimantadineViral Matrix ProteinsViroporin ProteinsAmantadineM2 protein, Influenza A virusRimantadineViral Matrix ProteinsViroporin ProteinsAM2 virusAmantadineM2 pocketPathway dockingRimantadine

Identifiers

PMID26391902
OpenAlexW1941252956

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.