Evidence map›Paper›PMID 26391891›Full record

ArticleJournal of child neurology2015

The Influence of Microdeletions and Microduplications of 16p11.2 on Global Transcription Profiles.

Mary Kusenda, Vladimir Vacic, Dheeraj Malhotra, Linda Rodgers, Kevin Pavon, Jennifer Meth, Ravinesh A Kumar, Susan L Christian, Hilde Peeters, Shawn S Cho and 3 more

Open access · greenAbstract readValidation Study
In one paragraph

Article in Journal of child neurology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.7field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
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  6. Gene dosage changes in KCTD13 result in penile and testicular anomalies via diminished androgen receptor function.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Mary KusendaStanley Institute for Cognitive Genomics, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA Department of Biology, Chemistry and Environmental Studies, Molloy College, Rockville Centre, New York 11571, USA Current affiliation.
Vladimir VacicStanley Institute for Cognitive Genomics, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.
Dheeraj MalhotraStanley Institute for Cognitive Genomics, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA Beyster Center for Genomics of Psychiatric Diseases, Department of Psychiatry, and Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA, USA.
Linda RodgersStanley Institute for Cognitive Genomics, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.
Kevin PavonStanley Institute for Cognitive Genomics, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.
Jennifer MethStanley Institute for Cognitive Genomics, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.
Ravinesh A KumarDepartment of Human Genetics, University of Chicago, Chicago, IL, USA.
Susan L ChristianDepartment of Human Genetics, University of Chicago, Chicago, IL, USA.
Hilde PeetersLaboratory for Genetics of Human Development, Department of Human Genetics, Faculty of Medicine, Katholieke Universiteit Leuven, Leuven, Netherlands.
Shawn S ChoBeyster Center for Genomics of Psychiatric Diseases, Department of Psychiatry, and Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA, USA.
Anjene AddingtonChild Psychiatry Branch, National Institute of Mental Health, Bethesda, MD, USA.
Judith L RapoportChild Psychiatry Branch, National Institute of Mental Health, Bethesda, MD, USA.
Jonathan SebatBeyster Center for Genomics of Psychiatric Diseases, Department of Psychiatry, and Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA, USA jsebat@ucsd.edu.
Cold Spring Harbor Laboratory · USUniversity of California, San Diego · USNational Institute of Mental Health · USUniversity of Chicago · USMolloy College · US

Funding

Center for Genomic and Phenomic Studies in AutismU24MH081810 · NIMH · UNIVERSITY OF SOUTHERN CALIFORNIA · PI LAJONCHERE, CLARA M · 2007 to 2011
$8.3M
The Role of Germline Mutation and Parental Age in Autism Spectrum DisordersR01MH076431 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SEBAT, JONATHAN · 2005 to 2015
$5.5M
3/4-Psychiatric GWAS Consortium: Genomic Follow-Up Next-Gen Sequencing & GenotypiU01MH094411 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SEBAT, JONATHAN · 2012 to 2015
$2.7M
NIMH NIH HHS MH076431NIMH NIH HHS R01 MH076431NIMH NIH HHS U01 MH094411NIMH NIH HHS U24 MH081810
6 · The paper itself

Abstract

Copy number variants (CNVs) of a 600 kb region on 16p11.2 are associated with neurodevelopmental disorders and changes in brain volume. The authors hypothesize that abnormal brain development associated with this CNV can be attributed to changes in transcriptional regulation. The authors determined the effects of 16p11.2 dosage on gene expression by transcription profiling of lymphoblast cell lines derived from 6 microdeletion carriers, 15 microduplication carriers and 15 controls. Gene dosage had a significant influence on the transcript abundance of a majority (20/34) of genes within the CNV region. In addition, a limited number of genes were dysregulated in trans. Genes most strongly correlated with patient head circumference included SULT1A, KCTD13, and TMEM242. Given the modest effect of 16p11.2 copy number on global transcriptional regulation in lymphocytes, larger studies utilizing neuronal cell types may be needed in order to elucidate the signaling pathways that influence brain development in this genetic disorder.

Indexed as

Chromosomes, Human, Pair 16DNA Copy Number VariationsGene DuplicationSequence DeletionAutism Spectrum DisorderCell LineGene ExpressionHeadHerpesvirus 4, HumanHumansLymph NodesMicroarray AnalysisOrgan SizeReal-Time Polymerase Chain ReactionSchizophreniaTranscriptome16p11.2autism spectrum disorders (ASD)copy number variation (CNV)gene expressionschizophrenia (SCZ)

Identifiers

PMID26391891
PMCPMC4739844
OpenAlexW2181990803

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.