Evidence map›Paper›PMID 26391192›Full record

ArticleNature communications2015

Non-random patterns in viral diversity.

Simon J Anthony, Ariful Islam, Christine Johnson, Isamara Navarrete-Macias, Eliza Liang, Komal Jain, Peta L Hitchens, Xiaoyu Che, Alexander Soloyvov, Allison L Hicks and 15 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Towards an understanding of the avian virome.The Journal of general virology · 2020
    Pooled it
  2. Trial
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Host species drive composition of mosquito virome.Nature ecology & evolution · 2024
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors.

Simon J AnthonyCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, 722 West 168th Street, New York, New York 10032, USA.
Ariful IslamEcoHealth Alliance, 460 West 34th Street, New York, New York 10001, USA.
Christine JohnsonOne Health Institute &Wildlife Health Center, School of Veterinary Medicine, University of California, Davis, California 95616, USA.
Isamara Navarrete-MaciasCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, 722 West 168th Street, New York, New York 10032, USA.
Eliza LiangCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, 722 West 168th Street, New York, New York 10032, USA.
Komal JainCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, 722 West 168th Street, New York, New York 10032, USA.
Peta L HitchensOne Health Institute &Wildlife Health Center, School of Veterinary Medicine, University of California, Davis, California 95616, USA.ORCID http://orcid.org/0000-0002-7528-7056
Xiaoyu CheCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, 722 West 168th Street, New York, New York 10032, USA.
Alexander SoloyvovCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, 722 West 168th Street, New York, New York 10032, USA.
Allison L HicksCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, 722 West 168th Street, New York, New York 10032, USA.
Rafael Ojeda-FloresFacultad de Medicina Veterinaria y Zootecnia, Universidad Nacional Autónoma de México, Ciudad Universitaria, México D.F. 04510, Mexico.ORCID http://orcid.org/0000-0002-7122-2968
Carlos Zambrana-TorrelioEcoHealth Alliance, 460 West 34th Street, New York, New York 10001, USA.
Werner UlrichNicolaus Copernicus University, Lwowska 1, 87-100 Toruń, Poland.ORCID http://orcid.org/0000-0002-8715-6619
Melinda K RostalEcoHealth Alliance, 460 West 34th Street, New York, New York 10001, USA.
Alexandra PetrosovCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, 722 West 168th Street, New York, New York 10032, USA.
Joel GarciaCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, 722 West 168th Street, New York, New York 10032, USA.
Najmul HaiderInternational Centre for Diahorreal Disease Research, Bangladesh (icddr,b), GPO Box 128, Dhaka 1000, Bangladesh.ORCID http://orcid.org/0000-0002-5980-3460
Nathan WolfeMetabiota, Inc. One Sutter, Suite 600, San Francisco, CA 94104, USA.
Tracey GoldsteinOne Health Institute &Wildlife Health Center, School of Veterinary Medicine, University of California, Davis, California 95616, USA.
Stephen S MorseDepartment of Epidemiology, Mailman School of Public Health, Columbia University, 722 West 168th Street, New York, New York 10032, USA.
Mahmudur RahmanIEDCR (Institute of epidemiology and disease control research), Ministry of Health and Family Welfare, Government of Bangladesh, Mohakhali, Dhaka 1212, Bangladesh.
Jonathan H EpsteinEcoHealth Alliance, 460 West 34th Street, New York, New York 10001, USA.
Jonna K MazetOne Health Institute &Wildlife Health Center, School of Veterinary Medicine, University of California, Davis, California 95616, USA.
Peter DaszakEcoHealth Alliance, 460 West 34th Street, New York, New York 10001, USA.
W Ian LipkinCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, 722 West 168th Street, New York, New York 10032, USA.

Funding

Translational CoreU19AI109761 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI BARIC, RALPH S · 2014 to 2018
$32.6M
NIAID NIH HHS U19 AI109761
6 · The paper itself

Abstract

It is currently unclear whether changes in viral communities will ever be predictable. Here we investigate whether viral communities in wildlife are inherently structured (inferring predictability) by looking at whether communities are assembled through deterministic (often predictable) or stochastic (not predictable) processes. We sample macaque faeces across nine sites in Bangladesh and use consensus PCR and sequencing to discover 184 viruses from 14 viral families. We then use network modelling and statistical null-hypothesis testing to show the presence of non-random deterministic patterns at different scales, between sites and within individuals. We show that the effects of determinism are not absolute however, as stochastic patterns are also observed. In showing that determinism is an important process in viral community assembly we conclude that it should be possible to forecast changes to some portion of a viral community, however there will always be some portion for which prediction will be unlikely.

Indexed as

Genetic VariationMacaca mulattaAnimalsAnimals, WildBangladeshFecesMolecular Sequence DataMonkey DiseasesVirus DiseasesViruses

Identifiers

PMID26391192
PMCPMC4595600

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.