Evidence map›Paper›PMID 26389739›Full record

ArticleNature structural & molecular biology2015

Structure-based energetics of protein interfaces guides foot-and-mouth disease virus vaccine design.

Abhay Kotecha, Julian Seago, Katherine Scott, Alison Burman, Silvia Loureiro, Jingshan Ren, Claudine Porta, Helen M Ginn, Terry Jackson, Eva Perez-Martin and 9 more

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
20.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 105 citations in OpenAlex.

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4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 6 institutions in 3 countries.

Abhay KotechaDivision of Structural Biology, University of Oxford, Oxford, UK.
Julian SeagoPirbright Institute, Pirbright, UK.
Katherine ScottTransboundary Animal Disease Programme, Agricultural Research Council-Onderstepoort Veterinary Institute, Onderstepoort, South Africa.
Alison BurmanPirbright Institute, Pirbright, UK.
Silvia LoureiroAnimal and Microbial Sciences, University of Reading, Reading, UK.
Jingshan RenDivision of Structural Biology, University of Oxford, Oxford, UK.
Claudine PortaDivision of Structural Biology, University of Oxford, Oxford, UK.
Helen M GinnDivision of Structural Biology, University of Oxford, Oxford, UK.
Terry JacksonPirbright Institute, Pirbright, UK.
Eva Perez-MartinPirbright Institute, Pirbright, UK.
C Alistair SiebertDivision of Structural Biology, University of Oxford, Oxford, UK.
Guntram PaulMerck Sharp &Dohme Animal Health, Cologne, Germany.
Juha T HuiskonenDivision of Structural Biology, University of Oxford, Oxford, UK.
Ian M JonesAnimal and Microbial Sciences, University of Reading, Reading, UK.
Robert M EsnoufDivision of Structural Biology, University of Oxford, Oxford, UK.
Elizabeth E FryDivision of Structural Biology, University of Oxford, Oxford, UK.
Francois F MareeTransboundary Animal Disease Programme, Agricultural Research Council-Onderstepoort Veterinary Institute, Onderstepoort, South Africa.
Bryan CharlestonPirbright Institute, Pirbright, UK.
David I StuartDivision of Structural Biology, University of Oxford, Oxford, UK.
University of Oxford · GBThe Pirbright Institute · GBOnderstepoort Veterinary Institute · ZAUniversity of Reading · GBDiamond Light Source · GBMSD (Germany) · DE

Funding

Biotechnology and Biological Sciences Research Council B14732Biotechnology and Biological Sciences Research Council EGM17691Medical Research Council G1000099Medical Research Council G100099Medical Research Council G1100525Medical Research Council MR/N00065X/1Wellcome TrustWellcome Trust 060208/Z/00/ZWellcome Trust 089755Wellcome Trust 090532/Z/09/ZWellcome Trust 093305/Z/10/Z
6 · The paper itself

Abstract

Virus capsids are primed for disassembly, yet capsid integrity is key to generating a protective immune response. Foot-and-mouth disease virus (FMDV) capsids comprise identical pentameric protein subunits held together by tenuous noncovalent interactions and are often unstable. Chemically inactivated or recombinant empty capsids, which could form the basis of future vaccines, are even less stable than live virus. Here we devised a computational method to assess the relative stability of protein-protein interfaces and used it to design improved candidate vaccines for two poorly stable, but globally important, serotypes of FMDV: O and SAT2. We used a restrained molecular dynamics strategy to rank mutations predicted to strengthen the pentamer interfaces and applied the results to produce stabilized capsids. Structural analyses and stability assays confirmed the predictions, and vaccinated animals generated improved neutralizing-antibody responses to stabilized particles compared to parental viruses and wild-type capsids.

Indexed as

Models, MolecularAnimalsAntibodies, NeutralizingBase SequenceCapsid ProteinsComputational BiologyCryoelectron MicroscopyCrystallography, X-RayDrug DesignEnzyme-Linked Immunosorbent AssayFoot-and-Mouth DiseaseFoot-and-Mouth Disease VirusMicroscopy, ElectronMolecular Dynamics SimulationMolecular Sequence DataProtein Interaction Domains and MotifsAntibodies, NeutralizingCapsid ProteinsViral Vaccines

Identifiers

PMID26389739
PMCPMC5985953
OpenAlexW1925547929

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.