Evidence map›Paper›PMID 26389541›Full record

ArticleProteomics2015

Proteomic and bioinformatics profile of paired human alveolar macrophages and peripheral blood monocytes.

Sara E Tomechko, Kathleen C Lundberg, Jessica Jarvela, Gurkan Bebek, Nicole G Chesnokov, Daniela Schlatzer, Rob M Ewing, W Henry Boom, Mark R Chance, Richard F Silver

Abstract readComparative Study
In one paragraph

Article in Proteomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 19 citations in OpenAlex.

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  8. ATP Evokes CaJournal of immunology (Baltimore, Md. : 1950) · 2018
    Article
  9. Article
  10. A novel microduplication of ARID1B: Clinical, genetic, and proteomic findings.American journal of medical genetics. Part A · 2017
    Article
  11. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Sara E TomechkoCenter for Proteomics and Bioinformatics, Case Western Reserve University, Cleveland, OH, USA.
Kathleen C LundbergCenter for Proteomics and Bioinformatics, Case Western Reserve University, Cleveland, OH, USA.
Jessica JarvelaDivision of Pulmonary, Critical Care, and Sleep Medicine, Case Western Reserve University School of Medicine, Cleveland, OH, USA.
Gurkan BebekCenter for Proteomics and Bioinformatics, Case Western Reserve University, Cleveland, OH, USA.
Nicole G ChesnokovCenter for Proteomics and Bioinformatics, Case Western Reserve University, Cleveland, OH, USA.
Daniela SchlatzerCenter for Proteomics and Bioinformatics, Case Western Reserve University, Cleveland, OH, USA.
Rob M EwingCenter for Proteomics and Bioinformatics, Case Western Reserve University, Cleveland, OH, USA.
W Henry BoomUniversity Hospitals Case Medical Center, Cleveland, OH, USA.
Mark R ChanceCenter for Proteomics and Bioinformatics, Case Western Reserve University, Cleveland, OH, USA.
Richard F SilverDivision of Pulmonary, Critical Care, and Sleep Medicine, Case Western Reserve University School of Medicine, Cleveland, OH, USA.
Case Western Reserve University · USLouis Stokes Cleveland VA Medical Center · USMichigan Department of Health and Human Services · US

Funding

Clinical and Translational Science Collaborative of ClevelandUL1TR000439 · NCATS · CASE WESTERN RESERVE UNIVERSITY · PI KONSTAN, MICHAEL W. · 2012 to 2016
$50.0M
WG3: HIV, Co-infections and Co-morbiditiesP30AI036219 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI Sharon L. Hillier, JONATHAN KARN · 1994 to 2026
$50.0M
Proteogenomics of dysregulated protein interaction networks in MTB infectionR01HL106798 · NHLBI · CASE WESTERN RESERVE UNIVERSITY · PI BOOM, W. HENRY, CHANCE, MARK R · 2010 to 2013
$2.8M
NCATS NIH HHS NIH UL1 TR000439NCATS NIH HHS UL1 TR000439NHLBI NIH HHS R01 HL106798NHLBI NIH HHS R01HL106798NIAID NIH HHS 5P30AI03621920NIAID NIH HHS P30 AI036219
6 · The paper itself

Abstract

Little is known about proteomic differences between pluripotent human peripheral blood monocytes (MN) and their terminally-differentiated pulmonary counterparts, alveolar macrophages (AM). To better characterize these cell populations, we performed a label-free shotgun proteomics assessment of matched AM and MN preparations from eight healthy volunteers. With an FDR of less than 0.45%, we identified 1754 proteins within AM and 1445 from MN. Comparison of the two proteomes revealed that 1239 of the proteins found in AM were shared with MN, whereas 206 proteins were uniquely identified in MN and 515 were unique to AM. Molecular and cellular functions, protein classes, development associations, and membership in physiological systems and canonical pathways were identified among the detected proteins. Analysis of biologic processes represented by these proteomes indicated that MN were most prominently enriched for proteins involved in cellular movement and immune cell trafficking. In contrast, AM were enriched for proteins involved in protein trafficking, molecular transport, and cellular assembly and organization. These findings provide a baseline proteomic resource for further studies aimed at better understanding of the functional differences between MN and AM in both health and disease.

Indexed as

AdultComputational BiologyHumansMacrophages, AlveolarMiddle AgedMonocytesProteomeSignal TransductionYoung AdultProteomeAlveolar macrophageCell biologyHuman immune responseLungPeripheral blood monocytesShotgun proteomics

Identifiers

PMID26389541
PMCPMC5518170
OpenAlexW2101205264

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.