Evidence map›Paper›PMID 26388885›Full record

ArticleFrontiers in plant science2015

Analysis of global gene expression profile of rice in response to methylglyoxal indicates its possible role as a stress signal molecule.

Charanpreet Kaur, Hemant R Kushwaha, Ananda Mustafiz, Ashwani Pareek, Sudhir K Sopory, Sneh L Singla-Pareek

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 75 citations in OpenAlex.

  1. Plants (Basel, Switzerland) · 2026
    Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Roles of Reactive Carbonyl Species (RCS) in Plant Response to Abiotic Stress.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  7. Article
  8. Article
  9. De Novo Transcriptome ofPlants (Basel, Switzerland) · 2022
    Article
  10. Methylglyoxal-glyoxalase system as a possible selection module for raising marker-safe plants in rice.Physiology and molecular biology of plants : an international journal of functional plant biology · 2021
    Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Functional characterization of the Glyoxalase-I (Plant signaling & behavior · 2020
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Charanpreet KaurPlant Molecular Biology Group, International Centre for Genetic Engineering and Biotechnology New Delhi, India.
Hemant R KushwahaSynthetic Biology and Biofuels Group, International Centre for Genetic Engineering and Biotechnology New Delhi, India.
Ananda MustafizPlant Molecular Biology Group, International Centre for Genetic Engineering and Biotechnology New Delhi, India.
Ashwani PareekStress Physiology and Molecular Biology Laboratory, School of Life Sciences, Jawaharlal Nehru University New Delhi, India.
Sudhir K SoporyPlant Molecular Biology Group, International Centre for Genetic Engineering and Biotechnology New Delhi, India.
Sneh L Singla-PareekPlant Molecular Biology Group, International Centre for Genetic Engineering and Biotechnology New Delhi, India.
International Centre for Genetic Engineering and Biotechnology · INJawaharlal Nehru University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Methylglyoxal (MG) is a toxic metabolite produced primarily as a byproduct of glycolysis. Being a potent glycating agent, it can readily bind macromolecules like DNA, RNA, or proteins, modulating their expression and activity. In plants, despite the known inhibitory effects of MG on growth and development, still limited information is available about the molecular mechanisms and response pathways elicited upon elevation in MG levels. To gain insight into the molecular basis of MG response, we have investigated changes in global gene expression profiles in rice upon exposure to exogenous MG using GeneChip microarrays. Initially, growth of rice seedlings was monitored in response to increasing MG concentrations which could retard plant growth in a dose-dependent manner. Upon exposure to 10 mM concentration of MG, a total of 1685 probe sets were up- or down-regulated by more than 1.5-fold in shoot tissues within 16 h. These were classified into 10 functional categories. The genes involved in signal transduction such as, protein kinases and transcription factors, were significantly over-represented in the perturbed transcriptome, of which several are known to be involved in abiotic and biotic stress response indicating a cross-talk between MG-responsive and stress-responsive signal transduction pathways. Through in silico studies, we could predict 7-8 bp long conserved motif as a possible MG-responsive element (MGRE) in the 1 kb upstream region of genes that were more than 10-fold up- or down-regulated in the analysis. Since several perturbations were found in signaling cascades in response to MG, we hereby suggest that it plays an important role in signal transduction probably acting as a stress signal molecule.

Indexed as

methylglyoxalricesignalingsignal transductiontranscriptome

Identifiers

PMID26388885
PMCPMC4558467
OpenAlexW1883551918

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.