Evidence map›Paper›PMID 26386064›Full record

ArticleApplied and environmental microbiology2015

Global transcriptome and mutagenic analyses of the acid tolerance response of Salmonella enterica serovar Typhimurium.

Daniel Ryan, Niladri Bhusan Pati, Urmesh K Ojha, Chandrashekhar Padhi, Shilpa Ray, Sangeeta Jaiswal, Gajinder P Singh, Gopala K Mannala, Tilman Schultze, Trinad Chakraborty and 1 more

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

  1. Article
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  3. Infection biology ofEcoSal Plus · 2024
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  5. Infection and immunity · 2024
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  6. Genotypic and phenotypic analysis ofFrontiers in microbiology · 2024
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  8. Activity of a Bacteriophage Cocktail to ControlPHAGE (New Rochelle, N.Y.) · 2023
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  9. Article
  10. Stress Response Mechanisms ofFoods (Basel, Switzerland) · 2022
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  11. Review
  12. Article
  13. Proteomic Analysis of the Antibacterial Effect of Improved Dian Dao San againstEvidence-based complementary and alternative medicine : eCAM · 2022
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

11 authors.

Daniel RyanSchool of Biotechnology, KIIT University, Bhubaneswar, Odisha, India.
Niladri Bhusan PatiInstitute of Medical Microbiology, German Centre of Infection Research, Site Giessen-Marburg-Langen, Justus-Liebig-University Giessen, Giessen, Germany.
Urmesh K OjhaSchool of Biotechnology, KIIT University, Bhubaneswar, Odisha, India.
Chandrashekhar PadhiSchool of Biotechnology, KIIT University, Bhubaneswar, Odisha, India.
Shilpa RaySchool of Biotechnology, KIIT University, Bhubaneswar, Odisha, India.
Sangeeta JaiswalSchool of Biotechnology, KIIT University, Bhubaneswar, Odisha, India.
Gajinder P SinghSchool of Biotechnology, KIIT University, Bhubaneswar, Odisha, India.
Gopala K MannalaInstitute of Medical Microbiology, German Centre of Infection Research, Site Giessen-Marburg-Langen, Justus-Liebig-University Giessen, Giessen, Germany.
Tilman SchultzeInstitute of Medical Microbiology, German Centre of Infection Research, Site Giessen-Marburg-Langen, Justus-Liebig-University Giessen, Giessen, Germany.
Trinad ChakrabortyInstitute of Medical Microbiology, German Centre of Infection Research, Site Giessen-Marburg-Langen, Justus-Liebig-University Giessen, Giessen, Germany.
Mrutyunjay SuarSchool of Biotechnology, KIIT University, Bhubaneswar, Odisha, India msuar@kiitbiotech.ac.in.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Salmonella enterica serovar Typhimurium (S. Typhimurium) is one of the leading causative agents of food-borne bacterial gastroenteritis. Swift invasion through the intestinal tract and successful establishment in systemic organs are associated with the adaptability of S. Typhimurium to different stress environments. Low-pH stress serves as one of the first lines of defense in mammalian hosts, which S. Typhimurium must efficiently overcome to establish an infection. Therefore, a better understanding of the molecular mechanisms underlying the adaptability of S. Typhimurium to acid stress is highly relevant. In this study, we have performed a transcriptome analysis of S. Typhimurium under the acid tolerance response (ATR) and found a large number of genes (∼47%) to be differentially expressed (more than 1.5-fold or less than -1.5-fold; P < 0.01). Functional annotation revealed differentially expressed genes to be associated with regulation, metabolism, transport and binding, pathogenesis, and motility. Additionally, our knockout analysis of a subset of differentially regulated genes facilitated the identification of proteins that contribute to S. Typhimurium ATR and virulence. Mutants lacking genes encoding the K(+) binding and transport protein KdpA, hypothetical protein YciG, the flagellar hook cap protein FlgD, and the nitrate reductase subunit NarZ were significantly deficient in their ATRs and displayed varied in vitro virulence characteristics. This study offers greater insight into the transcriptome changes of S. Typhimurium under the ATR and provides a framework for further research on the subject.

Indexed as

Gene Expression Regulation, BacterialTranscriptomeAcidsGene Expression ProfilingHydrogen-Ion ConcentrationMutationSalmonella typhimuriumSequence Analysis, RNAVirulenceAcids

Identifiers

PMID26386064
PMCPMC4651094

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.