Evidence map›Paper›PMID 26386052›Full record

ArticleApplied and environmental microbiology2015

Iron response regulator protein IrrB in Magnetospirillum gryphiswaldense MSR-1 helps control the iron/oxygen balance, oxidative stress tolerance, and magnetosome formation.

Qing Wang, Meiwen Wang, Xu Wang, Guohua Guan, Ying Li, Youliang Peng, Jilun Li

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 26 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Efficient Genome Editing ofFrontiers in microbiology · 2018
    Article
  10. Article
  11. Magnetosome biogenesis in magnetotactic bacteria.Nature reviews. Microbiology · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Qing WangState Key Laboratories for Agro-Biotechnology, China Agricultural University, Beijing, People's Republic of China College of Agriculture and Biotechnology, China Agricultural University, Beijing, People's Republic of China France-China Biomineralization and Nanostructure Laboratory, Beijing, People's Republic of China.
Meiwen WangState Key Laboratories for Agro-Biotechnology, China Agricultural University, Beijing, People's Republic of China France-China Biomineralization and Nanostructure Laboratory, Beijing, People's Republic of China.
Xu WangState Key Laboratories for Agro-Biotechnology, China Agricultural University, Beijing, People's Republic of China France-China Biomineralization and Nanostructure Laboratory, Beijing, People's Republic of China.
Guohua GuanState Key Laboratories for Agro-Biotechnology, China Agricultural University, Beijing, People's Republic of China France-China Biomineralization and Nanostructure Laboratory, Beijing, People's Republic of China.
Ying LiState Key Laboratories for Agro-Biotechnology, China Agricultural University, Beijing, People's Republic of China France-China Biomineralization and Nanostructure Laboratory, Beijing, People's Republic of China yingli528@vip.sina.com.
Youliang PengState Key Laboratories for Agro-Biotechnology, China Agricultural University, Beijing, People's Republic of China College of Agriculture and Biotechnology, China Agricultural University, Beijing, People's Republic of China.
Jilun LiState Key Laboratories for Agro-Biotechnology, China Agricultural University, Beijing, People's Republic of China France-China Biomineralization and Nanostructure Laboratory, Beijing, People's Republic of China.
China Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Magnetotactic bacteria are capable of forming nanosized, membrane-enclosed magnetosomes under iron-rich and oxygen-limited conditions. The complete genomic sequence of Magnetospirillum gryphiswaldense strain MSR-1 has been analyzed and found to contain five fur homologue genes whose protein products are predicted to be involved in iron homeostasis and the response to oxidative stress. Of these, only the MGMSRv2_3149 gene (irrB) was significantly downregulated under high-iron and low-oxygen conditions, during the transition of cell growth from the logarithmic to the stationary phase. The encoded protein, IrrB, containing the conserved HHH motif, was identified as an iron response regulator (Irr) protein belonging to the Fur superfamily. To investigate the function of IrrB, we constructed an irrB deletion mutant (ΔirrB). The levels of cell growth and magnetosome formation were lower in the ΔirrB strain than in the wild type (WT) under both high-iron and low-iron conditions. The ΔirrB strain also showed lower levels of iron uptake and H2O2 tolerance than the WT. Quantitative real-time reverse transcription-PCR analysis indicated that the irrB mutation reduced the expression of numerous genes involved in iron transport, iron storage, heme biosynthesis, and Fe-S cluster assembly. Transcription studies of the other fur homologue genes in the ΔirrB strain indicated complementary functions of the Fur proteins in MSR-1. IrrB appears to be directly responsible for iron metabolism and homeostasis and to be indirectly involved in magnetosome formation. We propose two IrrB-regulated networks (under high- and low-iron conditions) in MSR-1 cells that control the balance of iron and oxygen metabolism and account for the coexistence of five Fur homologues.

Indexed as

Oxidative StressAmino Acid SequenceDown-RegulationFerrosoferric OxideIronIron-Regulatory ProteinsMagnetosomesMagnetospirillumOxygenSequence AlignmentSequence DeletionFerrosoferric OxideIronIron-Regulatory ProteinsOxygen

Identifiers

PMID26386052
PMCPMC4651088
OpenAlexW1936851683

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.