Evidence map›Paper›PMID 26385968›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Birth of a new gene on the Y chromosome of Drosophila melanogaster.

Antonio Bernardo Carvalho, Beatriz Vicoso, Claudia A M Russo, Bonnielin Swenor, Andrew G Clark

Erratum issuedAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed.

  1. Article
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  4. Article
  5. Sex-linked gene traffic underlies the acquisition of sexually dimorphic UV color vision inProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  6. Article
  7. Article
  8. International journal of molecular sciences · 2022
    Review
  9. Article
  10. Article
  11. New Genes in theGenes · 2021
    Article
  12. Article
  13. Article
  14. Article
  15. Insects · 2021
    Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Antonio Bernardo CarvalhoDepartamento de Genética, Universidade Federal do Rio de Janeiro, Caixa Postal 68011, 21941-971, Rio de Janeiro, Brazil; bernardo@biologia.ufrj.br ac347@cornell.edu.
Beatriz VicosoDepartamento de Genética, Universidade Federal do Rio de Janeiro, Caixa Postal 68011, 21941-971, Rio de Janeiro, Brazil; Institute of Science and Technology Austria, A-3400 Klosterneuburg, Austria;
Claudia A M RussoDepartamento de Genética, Universidade Federal do Rio de Janeiro, Caixa Postal 68011, 21941-971, Rio de Janeiro, Brazil;
Bonnielin SwenorDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853.
Andrew G ClarkDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853 bernardo@biologia.ufrj.br ac347@cornell.edu.

Funding

Molecular Evolution of Drosophila Y ChromosomeR01GM064590 · NIGMS · PENNSYLVANIA STATE UNIVERSITY-UNIV PARK · PI CARVALHO, ANTONIO BERNARDO, CLARK, ANDREW G · 2002 to 2012
$2.0M
NIGMS NIH HHS R01 GM064590NIGMS NIH HHS R01 GM64590
6 · The paper itself

Abstract

Contrary to the pattern seen in mammalian sex chromosomes, where most Y-linked genes have X-linked homologs, the Drosophila X and Y chromosomes appear to be unrelated. Most of the Y-linked genes have autosomal paralogs, so autosome-to-Y transposition must be the main source of Drosophila Y-linked genes. Here we show how these genes were acquired. We found a previously unidentified gene (flagrante delicto Y, FDY) that originated from a recent duplication of the autosomal gene vig2 to the Y chromosome of Drosophila melanogaster. Four contiguous genes were duplicated along with vig2, but they became pseudogenes through the accumulation of deletions and transposable element insertions, whereas FDY remained functional, acquired testis-specific expression, and now accounts for ∼20% of the vig2-like mRNA in testis. FDY is absent in the closest relatives of D. melanogaster, and DNA sequence divergence indicates that the duplication to the Y chromosome occurred ∼2 million years ago. Thus, FDY provides a snapshot of the early stages of the establishment of a Y-linked gene and demonstrates how the Drosophila Y has been accumulating autosomal genes.

Indexed as

AnimalsChromosome MappingChromosomes, InsectDrosophila melanogasterDrosophila ProteinsFemaleGene DuplicationGene ExpressionGenes, InsectGenes, Y-LinkedINDEL MutationMaleMolecular Sequence DataPhylogenyReverse Transcriptase Polymerase Chain ReactionX ChromosomeDrosophila ProteinsFDY protein, DrosophilaDrosophila melanogasterFDYPacBiovig2Y chromosome

Identifiers

PMID26385968
PMCPMC4603513

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.