Evidence map›Paper›PMID 26385924›Full record

ArticleThe Journal of biological chemistry2015

Calcium Regulates the Activity and Structural Stability of Tpr, a Bacterial Calpain-like Peptidase.

Dominika Staniec, Miroslaw Ksiazek, Ida B Thøgersen, Jan J Enghild, Aneta Sroka, Danuta Bryzek, Matthew Bogyo, Magnus Abrahamson, Jan Potempa

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Gingimaps: Protein Localization in the Oral PathogenMicrobiology and molecular biology reviews : MMBR · 2020
    Review
  6. Article
  7. Article
  8. Article
  9. Frontiers in microbiology · 2017
    Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 4 countries.

Dominika StaniecDepartment of Microbiology, Faculty of Biochemistry, Biophysics, and Biotechnology, Jagiellonian University, 30-387 Krakow, Poland,; Department of Laboratory Medicine, Division of Clinical Chemistry and Pharmacology, Lund University, Lund, 22 100 Sweden,. Electronic address: dominika.staniec@uj.edu.pl.
Miroslaw KsiazekDepartment of Microbiology, Faculty of Biochemistry, Biophysics, and Biotechnology, Jagiellonian University, 30-387 Krakow, Poland,; Malopolska Center of Biotechnology, Jagiellonian University, 30-387 Krakow, Poland.
Ida B ThøgersenCenter for Insoluble Protein Structures (inSPIN) and Interdisciplinary Nanoscience Center (iNANO) at the Department of Molecular Biology, Aarhus University, Aarhus DK-8000, Denmark.
Jan J EnghildCenter for Insoluble Protein Structures (inSPIN) and Interdisciplinary Nanoscience Center (iNANO) at the Department of Molecular Biology, Aarhus University, Aarhus DK-8000, Denmark.
Aneta SrokaDepartment of Microbiology, Faculty of Biochemistry, Biophysics, and Biotechnology, Jagiellonian University, 30-387 Krakow, Poland.
Danuta BryzekDepartment of Microbiology, Faculty of Biochemistry, Biophysics, and Biotechnology, Jagiellonian University, 30-387 Krakow, Poland.
Matthew BogyoDepartment of Pathology, Stanford University School of Medicine, Stanford, California 94305.
Magnus AbrahamsonDepartment of Laboratory Medicine, Division of Clinical Chemistry and Pharmacology, Lund University, Lund, 22 100 Sweden.
Jan PotempaDepartment of Microbiology, Faculty of Biochemistry, Biophysics, and Biotechnology, Jagiellonian University, 30-387 Krakow, Poland,; Malopolska Center of Biotechnology, Jagiellonian University, 30-387 Krakow, Poland; Department of Oral Immunology and Infectious Diseases, University of Louisville School of Dentistry, Louisville, Kentucky 40202.
Jagiellonian University · PLAarhus University · DKLund University · SEStanford University · US

Funding

Bacterial peptidylarginine deiminase, a link between gums and joint diseaseR01DE022597 · NIDCR · UNIVERSITY OF LOUISVILLE · PI POTEMPA, JAN S · 2013 to 2023
$3.7M
NIDCR NIH HHS DE 022597NIDCR NIH HHS R01 DE022597
6 · The paper itself

Abstract

Porphyromonas gingivalis is a peptide-fermenting asaccharolytic periodontal pathogen. Its genome contains several genes encoding cysteine peptidases other than gingipains. One of these genes (PG1055) encodes a protein called Tpr (thiol protease) that has sequence similarity to cysteine peptidases of the papain and calpain families. In this study we biochemically characterize Tpr. We found that the 55-kDa Tpr inactive zymogen proteolytically processes itself into active forms of 48, 37, and 33 kDa via sequential truncations at the N terminus. These processed molecular forms of Tpr are associated with the bacterial outer membrane where they are likely responsible for the generation of metabolic peptides required for survival of the pathogen. Both autoprocessing and activity were dependent on calcium concentrations >1 mm, consistent with the protein's activity within the intestinal and inflammatory milieus. Calcium also stabilized the Tpr structure and rendered the protein fully resistant to proteolytic degradation by gingipains. Together, our findings suggest that Tpr is an example of a bacterial calpain, a calcium-responsive peptidase that may generate substrates required for the peptide-fermenting metabolism of P. gingivalis. Aside from nutrient generation, Tpr may also be involved in evasion of host immune response through degradation of the antimicrobial peptide LL-37 and complement proteins C3, C4, and C5. Taken together, these results indicate that Tpr likely represents an important pathogenesis factor for P. gingivalis.

Indexed as

Amino Acid SequenceAnimalsAntimicrobial Cationic PeptidesBacterial ProteinsCalciumCalpainCaseinsCatalytic DomainCathelicidinsCattleEndopeptidasesEnzyme StabilityFibrinogenFibronectinsGenes, BacterialHumansAntimicrobial Cationic PeptidesBacterial ProteinsCalciumCalpainCaseinsCathelicidinsEndopeptidasesFibrinogenFibronectinsRecombinant Proteinstpr proteasecalciumcalcium-dependent activitycalpainenzyme processingperiodontal diseasevirulence factor

Identifiers

PMID26385924
PMCPMC4646396
OpenAlexW2170894815

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.