Evidence map›Paper›PMID 26385556›Full record

ArticleParasites & vectors2015

Ascaris lumbricoides β carbonic anhydrase: a potential target enzyme for treatment of ascariasis.

Reza Zolfaghari Emameh, Marianne Kuuslahti, Daniela Vullo, Harlan R Barker, Claudiu T Supuran, Seppo Parkkila

Open access · goldAbstract read
In one paragraph

Article in Parasites & vectors, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Rapid determination of nematode cell and organ susceptibility to toxic treatments.International journal for parasitology. Drugs and drug resistance · 2020
    Article
  10. Biochemical and structural characterisation of a protozoan beta-carbonic anhydrase fromJournal of enzyme inhibition and medicinal chemistry · 2020
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Reza Zolfaghari EmamehDepartment of Anatomy, School of Medicine, University of Tampere, Tampere, Finland. zolfaghari.emameh.reza.x@student.uta.fi.
Marianne KuuslahtiDepartment of Anatomy, School of Medicine, University of Tampere, Tampere, Finland. marianne.kuuslahti@staff.uta.fi.
Daniela VulloDipartimento di Chimica, Laboratorio di Chimica Bioinorganica, Universita' degli Studi di Firenze, Sesto Fiorentino, Firenze, Italy. daniela.vullo@unifi.it.
Harlan R BarkerDepartment of Anatomy, School of Medicine, University of Tampere, Tampere, Finland. Barker.Harlan.R@student.uta.fi.
Claudiu T SupuranDipartimento di Chimica, Laboratorio di Chimica Bioinorganica, Universita' degli Studi di Firenze, Sesto Fiorentino, Firenze, Italy. claudiu.supuran@unifi.it.
Seppo ParkkilaDepartment of Anatomy, School of Medicine, University of Tampere, Tampere, Finland. seppo.parkkila@staff.uta.fi.
Tampere University · FIUniversity of Florence · ITFimlab (Finland) · FITampere University · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundA parasitic roundworm, Ascaris lumbricoides, is the causative agent of ascariasis, with approximately 760 million cases around the world. Helminthic infections occur with a high prevalence mostly in tropical and developing xcountries. Therefore, design of affordable broad-spectrum anti-helminthic agents against a variety of pathogens, including not only A. lumbricoides but also hookworms and whipworms, is desirable. Beta carbonic anhydrases (β-CAs) are considered promising targets of novel anthelminthics because these enzymes are present in various parasites, while completely absent in vertebrates.

methodsIn this study, we identified an A. lumbricoides β-CA (AIBCA) protein from protein sequence data using bioinformatics tools. We used computational biology resources and methods (including InterPro, CATH/Gene3D, KEGG, and METACYC) to analyze AlBCA and define potential roles of this enzyme in biological pathways. The AlBCA gene was cloned into pFastBac1, and recombinant AIBCA was produced in sf-9 insect cells. Kinetics of AlBCA were analyzed by a stopped-flow method.

resultsMultiple sequence alignment revealed that AIBCA contains the two sequence motifs, CXDXR and HXXC, typical for β-CAs. Recombinant AIBCA showed significant CA catalytic activity with kcat of 6.0 × 10(5) s(-1) and kcat/KM of 4.3 × 10(7) M(-1) s(-1). The classical CA inhibitor, acetazolamide, showed an inhibition constant of 84.1 nM. Computational modeling suggests that the molecular architecture of AIBCA is highly similar to several other known β-CA structures. Functional predictions suggest that AIBCA might play a role in bicarbonate-mediated metabolic pathways, such as gluconeogenesis and removal of metabolically produced cyanate.

conclusionsThese results open new avenues to further investigate the precise functions of β-CAs in parasites and suggest that novel β-CA specific inhibitors should be developed and tested against helminthic diseases.

Indexed as

Amino Acid SequenceAnimalsAscariasisAscaris lumbricoidesCarbonic AnhydrasesHumansModels, MolecularMolecular Sequence DataProtein ConformationSequence AlignmentCarbonic Anhydrases

Identifiers

PMID26385556
PMCPMC4575479
OpenAlexW1826500840

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.