Evidence map›Paper›PMID 26385509›Full record

ArticleRNA (New York, N.Y.)2015

Coevolution of RtcB and Archease created a multiple-turnover RNA ligase.

Kevin K Desai, Amanda L Beltrame, Ronald T Raines

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 26 citations in OpenAlex.

  1. Spligation enables programmable chimeric RNA generation in living cells.bioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Insights into the structure and function of the RNA ligase RtcB.Cellular and molecular life sciences : CMLS · 2023
    Review
  6. The life and times of a tRNA.RNA (New York, N.Y.) · 2023
    Review
  7. Regulation of Archease by the mTOR-vATPase axis.Development (Cambridge, England) · 2022
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Kevin K DesaiDepartment of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA.
Amanda L BeltrameDepartment of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA.
Ronald T RainesDepartment of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA Department of Chemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA.
University of Wisconsin–Madison · US

Funding

RIBONUCLEASES IN CANCER THERAPYR01CA073808 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI RAINES, RONALD T · 1997 to 2024
$7.3M
Characterization of a Non-Spliceosomal mRNA LigaseF32GM100681 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI DESAI, KEVIN K · 2012 to 2014
$156k
NCI NIH HHS R01 CA073808NIGMS NIH HHS F32 GM100681
6 · The paper itself

Abstract

RtcB is a noncanonical RNA ligase that joins either 2',3'-cyclic phosphate or 3'-phosphate termini to 5'-hydroxyl termini. The genes encoding RtcB and Archease constitute a tRNA splicing operon in many organisms. Archease is a cofactor of RtcB that accelerates RNA ligation and alters the NTP specificity of the ligase from Pyrococcus horikoshii. Yet, not all organisms that encode RtcB also encode Archease. Here we sought to understand the differences between Archease-dependent and Archease-independent RtcBs so as to illuminate the evolution of Archease and its function. We report on the Archease-dependent RtcB from Thermus thermophilus and the Archease-independent RtcB from Thermobifida fusca. We find that RtcB from T. thermophilus can catalyze multiple turnovers only in the presence of Archease. Remarkably, Archease from P. horikoshii can activate T. thermophilus RtcB, despite low sequence identity between the Archeases from these two organisms. In contrast, RtcB from T. fusca is a single-turnover enzyme that is unable to be converted into a multiple-turnover ligase by Archease from either P. horikoshii or T. thermophilus. Thus, our data indicate that Archease likely evolved to support multiple-turnover activity of RtcB and that coevolution of the two proteins is necessary for a functional interaction.

Indexed as

Amino Acyl-tRNA SynthetasesBacterial ProteinsCatalysisOperonPyrococcus horikoshiiRNA Ligase (ATP)RNA SplicingRNA, TransferThermusAmino Acyl-tRNA SynthetasesBacterial ProteinsRNA Ligase (ATP)RNA, TransferArcheaseRNA ligationRtcB

Identifiers

PMID26385509
PMCPMC4604427
OpenAlexW2277859605

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.