ArticleBMC genomics2015
Identification of novel small ncRNAs in pollen of tomato.
Article in BMC genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
19 citing papers in PubMed, 31 citations in OpenAlex.
- Genome-Wide Identification of GH17s Family Genes and Biological Function Analysis of SlA6 in Tomato.Plants (Basel, Switzerland) · 2024Article
- Multi-omics research on common allergens during the ripening of pollen and poplar flocs ofFrontiers in plant science · 2023Article
- Tomato MicroRNAs and Their Functions.International journal of molecular sciences · 2022Review
- The Characters of Non-Coding RNAs and Their Biological Roles in Plant Development and Abiotic Stress Response.International journal of molecular sciences · 2022Review
- Cultivar-biased regulation of HSFA7 and HSFB4a govern high-temperature tolerance in tomato.Planta · 2022Article
- Review
- Heat stress response mechanisms in pollen development.The New phytologist · 2021Review
- Genome-Wide Identification and Analysis of Small Nucleolar RNAs and Their Roles in Regulating Latex Regeneration in the Rubber Tree (Frontiers in plant science · 2021Article
- Engineered Ripening-Specific Accumulation of Polyamines Spermidine and Spermine in Tomato Fruit Upregulates Clustered C/D Box snoRNA Gene Transcripts in Concert with Ribosomal RNA Biogenesis in the Red Ripe Fruit.Plants (Basel, Switzerland) · 2020Article
- miRNAs involved in transcriptome remodeling during pollen development and heat stress response in Solanum lycopersicum.Scientific reports · 2020Article
- PANOMICS meets germplasm.Plant biotechnology journal · 2020Review
- Bioinformatics Resources for Plant Abiotic Stress Responses: State of the Art and Opportunities in the Fast Evolving -Omics Era.Plants (Basel, Switzerland) · 2020Review
- Noncoding RNAs: functional regulatory factors in tomato fruit ripening.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Review
- Article
- The coupling of transcriptome and proteome adaptation during development and heat stress response of tomato pollen.BMC genomics · 2018Article
- Identification and expression profiling of microRNAs involved in the stigma exsertion under high-temperature stress in tomato.BMC genomics · 2017Article
- Transcriptomic analysis of molecular responses in Malus domestica 'M26' roots affected by apple replant disease.Plant molecular biology · 2017Article
- Bioinformatics resources for pollen.Plant reproduction · 2016Review
- Epigenetic events in plant male germ cell heat stress responses.Plant reproduction · 2016Review
Corrections and comments
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Authors and funding
19 authors at 7 institutions in 4 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundThe unprecedented role of sncRNAs in the regulation of pollen biogenesis on both transcriptional and epigenetic levels has been experimentally proven. However, little is known about their global regulation, especially under stress conditions. We used tomato pollen in order to identify pollen stage-specific sncRNAs and their target mRNAs. We further deployed elevated temperatures to discern stress responsive sncRNAs. For this purpose high throughput sncRNA-sequencing as well as Massive Analysis of cDNA Ends (MACE) were performed for three-replicated sncRNAs libraries derived from tomato tetrad, post-meiotic, and mature pollen under control and heat stress conditions.
resultsUsing the omiRas analysis pipeline we identified known and predicted novel miRNAs as well as sncRNAs from other classes, responsive or not to heat. Differential expression analysis revealed that post-meiotic and mature pollen react most strongly by regulation of the expression of coding and non-coding genomic regions in response to heat. To gain insight to the function of these miRNAs, we predicted targets and annotated them to Gene Ontology terms. This approach revealed that most of them belong to protein binding, transcription, and Serine/Threonine kinase activity GO categories. Beside miRNAs, we observed differential expression of both tRNAs and snoRNAs in tetrad, post-meiotic, and mature pollen when comparing normal and heat stress conditions.
conclusionsThus, we describe a global spectrum of sncRNAs expressed in pollen as well as unveiled those which are regulated at specific time-points during pollen biogenesis. We integrated the small RNAs into the regulatory network of tomato heat stress response in pollen.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.