Evidence map›Paper›PMID 26384762›Full record

ArticleBMC bioinformatics2015

Lab Retriever: a software tool for calculating likelihood ratios incorporating a probability of drop-out for forensic DNA profiles.

Keith Inman, Norah Rudin, Ken Cheng, Chris Robinson, Adam Kirschner, Luke Inman-Semerau, Kirk E Lohmueller

Abstract read
In one paragraph

Article in BMC bioinformatics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Interpol review of forensic biology and forensic DNA typing 2016-2019.Forensic science international. Synergy · 2020
    Review
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Keith InmanDepartment of Criminal Justice Administration, California State University, East Bay, 25800 Carlos Bee Boulevard, Hayward, CA, 94542, USA. keith.inman@csueastbay.edu.
Norah Rudin, 650 Castro Street, Suite 120-404, Mountain View, CA, 94041, USA. norah@forensicdna.com.
Ken Cheng, 1224 Burnham Dr, San Jose, CA, 95132, USA. ken.lin.cheng@gmail.com.
Chris Robinson, 2854 Marsh St, Los Angeles, CA, 90039, USA. crob@coderbarn.com.
Adam Kirschner, 401 East 86th St., Apt 12H, New York, NY, 10028, USA.
Luke Inman-Semerau, 604 Lochmoor Ct, Danville, CA, 94526, USA. luke.semerau@gmail.com.
Kirk E LohmuellerDepartment of Ecology and Evolutionary Biology, University of California, Los Angeles, 621 Charles E. Young Dr. South, Los Angeles, CA, 90095-1606, USA. klohmueller@ucla.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundTechnological advances have enabled the analysis of very small amounts of DNA in forensic cases. However, the DNA profiles from such evidence are frequently incomplete and can contain contributions from multiple individuals. The complexity of such samples confounds the assessment of the statistical weight of such evidence. One approach to account for this uncertainty is to use a likelihood ratio framework to compare the probability of the evidence profile under different scenarios. While researchers favor the likelihood ratio framework, few open-source software solutions with a graphical user interface implementing these calculations are available for practicing forensic scientists.

resultsTo address this need, we developed Lab Retriever, an open-source, freely available program that forensic scientists can use to calculate likelihood ratios for complex DNA profiles. Lab Retriever adds a graphical user interface, written primarily in JavaScript, on top of a C++ implementation of the previously published R code of Balding. We redesigned parts of the original Balding algorithm to improve computational speed. In addition to incorporating a probability of allelic drop-out and other critical parameters, Lab Retriever computes likelihood ratios for hypotheses that can include up to four unknown contributors to a mixed sample. These computations are completed nearly instantaneously on a modern PC or Mac computer.

conclusionsLab Retriever provides a practical software solution to forensic scientists who wish to assess the statistical weight of evidence for complex DNA profiles. Executable versions of the program are freely available for Mac OSX and Windows operating systems.

Indexed as

User-Computer InterfaceDNADNA FingerprintingForensic GeneticsHumansInternetLikelihood FunctionsDNA

Identifiers

PMID26384762
PMCPMC4575494

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.