Evidence map›Paper›PMID 26384423›Full record

ArticleNucleic acids research2015

The sliding clamp tethers the endonuclease domain of MutL to DNA.

Monica C Pillon, Vignesh M P Babu, Justin R Randall, Jiudou Cai, Lyle A Simmons, Mark D Sutton, Alba Guarné

Abstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

  1. Review
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  12. International journal of molecular sciences · 2023
    Article
  13. Review
  14. Article
  15. Bacterial DNA excision repair pathways.Nature reviews. Microbiology · 2022
    Review
  16. Article
  17. Article
  18. Review
  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Monica C PillonDepartment of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, Ontario L8S 4K1, Canada.
Vignesh M P BabuDepartment of Biochemistry, The School of Medicine and Biomedical Sciences, University at Buffalo, Buffalo, New York, 14214, USA Witebsky Center for Microbial Pathogenesis and Immunology, The School of Medicine and Biomedical Sciences, University at Buffalo, Buffalo, New York, 14214, USA.
Justin R RandallDepartment of Molecular, Cellular and Developmental Biology, University of Michigan, Ann Arbor MI 48109, USA.
Jiudou CaiDepartment of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, Ontario L8S 4K1, Canada.
Lyle A SimmonsDepartment of Molecular, Cellular and Developmental Biology, University of Michigan, Ann Arbor MI 48109, USA.
Mark D SuttonDepartment of Biochemistry, The School of Medicine and Biomedical Sciences, University at Buffalo, Buffalo, New York, 14214, USA Witebsky Center for Microbial Pathogenesis and Immunology, The School of Medicine and Biomedical Sciences, University at Buffalo, Buffalo, New York, 14214, USA Genetics, Genomics and Bioinformatics Program, The School of Medicine and Biomedical Sciences, University at Buffalo, Buffalo, New York, 14214, USA.
Alba GuarnéDepartment of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, Ontario L8S 4K1, Canada guarnea@mcmaster.ca.

Funding

Cellular Biotechnology Training Program (CBTP)T32GM008353 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SCHWENDEMAN, ANNA · 1991 to 2021
$9.3M
Regulation of DNA Replication and RepairR01GM066094 · NIGMS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI SUTTON, MARK D. · 2003 to 2016
$4.0M
Cellular Biotechnology Training Program (CBTP) - Years 31-35T32GM145304 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Guizhi Zhu · 2022 to 2026
$2.6M
Regulation of DNA replication and repairR56GM066094 · NIGMS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI SUTTON, MARK D. · 2008 to 2008
$308k
NIGMS NIH HHS GM066094NIGMS NIH HHS R01 GM066094NIGMS NIH HHS T32 GM008353NIGMS NIH HHS T32 GM145304
6 · The paper itself

Abstract

The sliding clamp enhances polymerase processivity and coordinates DNA replication with other critical DNA processing events including translesion synthesis, Okazaki fragment maturation and DNA repair. The relative binding affinity of the sliding clamp for its partners determines how these processes are orchestrated and is essential to ensure the correct processing of newly replicated DNA. However, while stable clamp interactions have been extensively studied; dynamic interactions mediated by the sliding clamp remain poorly understood. Here, we characterize the interaction between the bacterial sliding clamp (β-clamp) and one of its weak-binding partners, the DNA mismatch repair protein MutL. Disruption of this interaction causes a mild mutator phenotype in Escherichia coli, but completely abrogates mismatch repair activity in Bacillus subtilis. We stabilize the MutL-β interaction by engineering two cysteine residues at variable positions of the interface. Using disulfide bridge crosslinking, we have stabilized the E. coli and B. subtilis MutL-β complexes and have characterized their structures using small angle X-ray scattering. We find that the MutL-β interaction greatly stimulates the endonuclease activity of B. subtilis MutL and supports this activity even in the absence of the N-terminal region of the protein.

Indexed as

Adenosine TriphosphatasesBacillus subtilisBacterial ProteinsBinding SitesCysteineDNADNA Polymerase IIIEndodeoxyribonucleasesEscherichia coliEscherichia coli ProteinsModels, MolecularMutL ProteinsProtein BindingProtein Structure, TertiaryAdenosine TriphosphatasesBacterial Proteinsbeta subunit, DNA polymerase IIICysteineDNADNA Polymerase IIIEndodeoxyribonucleasesEscherichia coli ProteinsMutL protein, E coliMutL Proteins

Identifiers

PMID26384423
PMCPMC4678855

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.