Evidence map›Paper›PMID 26384308›Full record

ArticleOncotarget2015

Necdin is a breast cancer metastasis suppressor that regulates the transcription of c-Myc.

Minnkyong Lee, Sarah M Beggs, Derek Gildea, Sujata Bupp, Jens Lichtenberg, Niraj S Trivedi, NISC Comparative Sequencing Program, Ying Hu, David M Bodine, Nigel P S Crawford

Open access · diamondAbstract readComparative Study
In one paragraph

Article in Oncotarget, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Aging · 2025
    Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Necdin: A purposive integrator of molecular interaction networks for mammalian neuron vitality.Genes to cells : devoted to molecular & cellular mechanisms · 2021
    Review
  8. Article
  9. Review
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Minnkyong LeeGenetics and Molecular Biology Branch, National Human Genome Research Institute, NIH, Bethesda MD, USA.
Sarah M BeggsGenetics and Molecular Biology Branch, National Human Genome Research Institute, NIH, Bethesda MD, USA.
Derek GildeaComputational and Statistical Genomics Branch, National Human Genome Research Institute, NIH, Bethesda MD, USA.
Sujata BuppGenetics and Molecular Biology Branch, National Human Genome Research Institute, NIH, Bethesda MD, USA.
Jens LichtenbergGenetics and Molecular Biology Branch, National Human Genome Research Institute, NIH, Bethesda MD, USA.
Niraj S TrivediComputational and Statistical Genomics Branch, National Human Genome Research Institute, NIH, Bethesda MD, USA.
NISC Comparative Sequencing Program
Ying HuCenter for Biomedical Informatics and Information Technology, National Cancer Institute, NIH, Rockville MD, USA.
David M BodineGenetics and Molecular Biology Branch, National Human Genome Research Institute, NIH, Bethesda MD, USA.
Nigel P S CrawfordGenetics and Molecular Biology Branch, National Human Genome Research Institute, NIH, Bethesda MD, USA.
National Human Genome Research Institute · US

Funding

Inter- and Intra-Species Comparative SequencingZIBHG000196 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI THOMAS, JAMES · 2009 to 2025
$177.6M
Hematopoietic Stem Cell BiologyZIAHG000083 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI BODINE, DAVID M. · 2009 to 2022
$12.1M
Red Cell BiologyZIAHG200339 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI BODINE, DAVID M. · 2009 to 2022
$11.8M
Germline modifiers of tumor progression and metastasis in prostate cancerZIAHG200366 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI CRAWFORD, NIGEL · 2010 to 2016
$5.0M
Intramural NIH HHS
6 · The paper itself

Abstract

Metastasis is the primary cause of death in breast cancer. Earlier studies using a mammary tumorigenesis mouse model identified Necdin (Ndn)as a germline modifier of metastasis. Differential expression of Ndn induces a gene-expression signature that predicts prognosis in human breast cancer. Additionally, a non-synonymous germline single nucleotide polymorphism (T50C; V17A) in Ndn distinguishes mouse strains with differing metastatic capacities. To better understand how hereditary factors influence metastasis in breast cancer, we characterized NDN-mediated transcription. Haplotype analysis in a well-characterized breast cancer cohort revealed that NDN germline variation is associated with both NDN expression levels and patient outcome. To examine the role of NDN in mammary tumor metastasis and transcriptional regulation, mouse mammary tumor cell lines stably over-expressing either the wildtype 50T or variant 50C Ndn allele were generated. Cells over-expressing Ndn 50T, but not Ndn 50C, exhibited significant decrease in cell invasiveness and pulmonary metastases compared to control cells. Transcriptome analyses identified a 71-gene expression signature that distinguishes cells over-expressing the two Ndn allelic variants. Furthermore, ChIP assays revealed c-Myc, a target gene of NDN, to be differentially regulated by the allelic variants. These data demonstrate that NDN and the T50C allele regulate gene expression and metastasis efficiency.

Indexed as

Gene Expression Regulation, NeoplasticGenes, Tumor SuppressorAnimalsBreast NeoplasmsCell ProliferationChromatin ImmunoprecipitationFemaleGene Expression ProfilingGerm-Line MutationHumansMiceMice, Inbred BALB CMice, NudeNeoplasm StagingNerve Tissue ProteinsNuclear ProteinsMYC protein, humannecdinNerve Tissue ProteinsNuclear ProteinsProto-Oncogene Proteins c-mycRNA, Messengerbreast cancerc-Mycgermline polymorphismsmetastasis suppressorsnecdin

Identifiers

PMID26384308
PMCPMC4741624
OpenAlexW2256921959

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.