Evidence map›Paper›PMID 26381541›Full record

ReviewBiochimica et biophysica acta2016

De novo peroxisome biogenesis: Evolving concepts and conundrums.

Gaurav Agrawal, Suresh Subramani

Abstract readReview
In one paragraph

Review in Biochimica et biophysica acta, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
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  9. Review
  10. Review
  11. Article
  12. Article
  13. Review
  14. The Effect of aCells · 2022
    Article
  15. Review
  16. Article
  17. Article
  18. Review
  19. Review
  20. Regulation of peroxisomal trafficking and distribution.Cellular and molecular life sciences : CMLS · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Gaurav AgrawalSection of Molecular Biology, Division of Biological Sciences, University of California, San Diego, 9500 Gilman Drive, UC San Diego, La Jolla, CA 92093-0322, USA.
Suresh SubramaniSection of Molecular Biology, Division of Biological Sciences, University of California, San Diego, 9500 Gilman Drive, UC San Diego, La Jolla, CA 92093-0322, USA. Electronic address: ssubramani@ucsd.edu.

Funding

TARGETING OF PROTEINS INTO PEROXISOMESR01DK041737 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI AITCHISON, JOHN D., SUBRAMANI, SURESH · 1990 to 2025
$8.4M
NIDDK NIH HHS R01 DK041737NIDDK NIH HHS R01DK041737
6 · The paper itself

Abstract

Peroxisomes proliferate by growth and division of pre-existing peroxisomes or could arise de novo. Though the de novo pathway of peroxisome biogenesis is a more recent discovery, several studies have highlighted key mechanistic details of the pathway. The endoplasmic reticulum (ER) is the primary source of lipids and proteins for the newly-formed peroxisomes. More recently, an intricate sorting process functioning at the ER has been proposed, that segregates specific PMPs first to peroxisome-specific ER domains (pER) and then assembles PMPs selectively into distinct pre-peroxisomal vesicles (ppVs) that later fuse to form import-competent peroxisomes. In addition, plausible roles of the three key peroxins Pex3, Pex16 and Pex19, which are also central to the growth and division pathway, have been suggested in the de novo process. In this review, we discuss key developments and highlight the unexplored avenues in de novo peroxisome biogenesis.

Indexed as

Organelle BiogenesisAnimalsEndoplasmic ReticulumEukaryotic CellsFungal ProteinsGene Expression RegulationHumansMembrane ProteinsPeroxinsPeroxisomesPlantsProtein IsoformsProtein Structure, TertiaryProtein TransportSaccharomyces cerevisiae ProteinsSignal TransductionFungal ProteinsMembrane ProteinsPeroxinsPEX16 protein, Yarrowia lipolyticaPEX19 protein, S cerevisiaePEX3 protein, S cerevisiaeProtein IsoformsSaccharomyces cerevisiae ProteinsDe novo peroxisome biogenesisIntra-ER sorting, import of PMPs into the ER, growth and division vs de novo peroxisome biogenesisPre-peroxisomal-ER, pERPre-peroxisomal vesicles, ppVsRole of endoplasmic reticulum in peroxisome biogenesis, peroxisomal membrane protein biogenesisRole of the endoplasmic reticulum in yeast, mammals and plants

Identifiers

PMID26381541
PMCPMC4791208

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.