Evidence map›Paper›PMID 26381315›Full record

ArticlePlant physiology2015

Light-Induced Indeterminacy Alters Shade-Avoiding Tomato Leaf Morphology.

Daniel H Chitwood, Ravi Kumar, Aashish Ranjan, Julie M Pelletier, Brad T Townsley, Yasunori Ichihashi, Ciera C Martinez, Kristina Zumstein, John J Harada, Julin N Maloof and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
12.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 69 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Promoter replacement ofHorticulture research · 2023
    Article
  15. Article
  16. Article
  17. Monoseeding Increases Peanut (Plants (Basel, Switzerland) · 2021
    Article
  18. Article
  19. Review
  20. Effects of theFrontiers in plant science · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Daniel H ChitwoodDepartment of Plant Biology, University of California, Davis, California 95616.ORCID http://orcid.org/0000-0003-4875-1447
Ravi KumarDepartment of Plant Biology, University of California, Davis, California 95616.
Aashish RanjanDepartment of Plant Biology, University of California, Davis, California 95616.
Julie M PelletierDepartment of Plant Biology, University of California, Davis, California 95616.
Brad T TownsleyDepartment of Plant Biology, University of California, Davis, California 95616.
Yasunori IchihashiDepartment of Plant Biology, University of California, Davis, California 95616.
Ciera C MartinezDepartment of Plant Biology, University of California, Davis, California 95616.ORCID http://orcid.org/0000-0003-4296-998X
Kristina ZumsteinDepartment of Plant Biology, University of California, Davis, California 95616.ORCID http://orcid.org/0000-0001-9516-8081
John J HaradaDepartment of Plant Biology, University of California, Davis, California 95616.
Julin N MaloofDepartment of Plant Biology, University of California, Davis, California 95616.ORCID http://orcid.org/0000-0002-9623-2599
Neelima R SinhaDepartment of Plant Biology, University of California, Davis, California 95616 nrsinha@ucdavis.edu.ORCID http://orcid.org/0000-0002-1494-7065
University of California, Davis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plants sense the foliar shade of competitors and alter their developmental programs through the shade-avoidance response. Internode and petiole elongation, and changes in overall leaf area and leaf mass per area, are the stereotypical architectural responses to foliar shade in the shoot. However, changes in leaf shape and complexity in response to shade remain incompletely, and qualitatively, described. Using a meta-analysis of more than 18,000 previously published leaflet outlines, we demonstrate that shade avoidance alters leaf shape in domesticated tomato (Solanum lycopersicum) and wild relatives. The effects of shade avoidance on leaf shape are subtle with respect to individual traits but are combinatorially strong. We then seek to describe the developmental origins of shade-induced changes in leaf shape by swapping plants between light treatments. Leaf size is light responsive late into development, but patterning events, such as stomatal index, are irrevocably specified earlier. Observing that shade induces increases in shoot apical meristem size, we then describe gene expression changes in early leaf primordia and the meristem using laser microdissection. We find that in leaf primordia, shade avoidance is not mediated through canonical pathways described in mature organs but rather through the expression of KNOTTED1-LIKE HOMEOBOX and other indeterminacy genes, altering known developmental pathways responsible for patterning leaf shape. We also demonstrate that shade-induced changes in leaf primordium gene expression largely do not overlap with those found in successively initiated leaf primordia, providing evidence against classic hypotheses that shaded leaf morphology results from the prolonged production of juvenile leaf types.

Indexed as

Gene Expression Regulation, DevelopmentalGene Expression Regulation, PlantHomeodomain ProteinsLightMeristemModels, BiologicalPhenotypePlant LeavesPlant ProteinsSolanum lycopersicumHomeodomain ProteinsKnox1 protein, plantPlant Proteins

Identifiers

PMID26381315
PMCPMC4634097
OpenAlexW2112111257

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.