Evidence map›Paper›PMID 26380687›Full record

ArticleEcology and evolution2015

Population structure of the Indonesian giant tiger shrimp Penaeus monodon: a window into evolutionary similarities between paralogous mitochondrial DNA sequences and their genomes.

Muslihudeen A Abdul-Aziz, Gerhard Schöfl, Grit Mrotzek, Haryanti Haryanti, Ketut Sugama, Hans Peter Saluz

Abstract read
In one paragraph

Article in Ecology and evolution, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Muslihudeen A Abdul-AzizLeibniz Institute for Natural Product Research and Infection Biology Beutenbergstr. 11a, 07745, Jena, Germany ; Friedrich Schiller University Jena Jena, Germany.
Gerhard SchöflLeibniz Institute for Natural Product Research and Infection Biology Beutenbergstr. 11a, 07745, Jena, Germany ; DKMS Life Science Lab GmbH Fiedlerstr. 34, 01277, Dresden, Germany.
Grit MrotzekLeibniz Institute for Natural Product Research and Infection Biology Beutenbergstr. 11a, 07745, Jena, Germany.
Haryanti HaryantiInstitute for Mariculture Research and Development - IMRAD, Ds Penyabangan Br. Gondol PO. Box 140, Singaraja, Bali, 81101, Indonesia.
Ketut SugamaResearch and Development Center for Aquaculture JL Ragunan 20, Pasar Minggu, Jakarta Selatan, 12540, Indonesia.
Hans Peter SaluzLeibniz Institute for Natural Product Research and Infection Biology Beutenbergstr. 11a, 07745, Jena, Germany ; Friedrich Schiller University Jena Jena, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Here we used both microsatellites and mtCR (mitochondrial DNA control region) sequences as genetic markers to examine the genetic diversity and population structure of Penaeus monodon shrimp from six Indonesian regions. The microsatellite data showed that shrimp from the Indian and the Pacific Ocean were genetically distinct from each other. It has been reported previously that P. monodon mtCR sequences from the Indo-Pacific group into two major paralogous clades of unclear origin. Here we show that the population structure inferred from mtCR sequences matches the microsatellite-based population structure for one of these clades. This is consistent with the notion that this mtCR clade shares evolutionary history with nuclear DNA and may thus represent nuclear mitochondrial pseudogenes (Numts).

Indexed as

MicrosatellitemtCRmtDNANumtsparalogous sequencesPenaeus monodon

Identifiers

PMID26380687
PMCPMC4567862

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.