Evidence map›Paper›PMID 26380157›Full record

ArticleCPT: pharmacometrics & systems pharmacology2015

Graphic Mining of High-Order Drug Interactions and Their Directional Effects on Myopathy Using Electronic Medical Records.

L Du, A Chakraborty, C-W Chiang, L Cheng, S K Quinney, H Wu, P Zhang, L Li, L Shen

Abstract read
In one paragraph

Article in CPT: pharmacometrics & systems pharmacology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Mining Directional Drug Interaction Effects on Myopathy Using the FAERS Database.IEEE journal of biomedical and health informatics · 2019
    Article
  7. Article
  8. Review
  9. Pattern Discovery from High-Order Drug-Drug Interaction Relations.Journal of healthcare informatics research · 2018
    Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

L DuCenter for Computational Biology and Bioinformatics, Indiana University School of Medicine Indianapolis, Indiana, USA ; Departments of Radiology and Imaging Sciences, Indiana University School of Medicine Indianapolis, Indiana, USA.
A ChakrabortyCenter for Computational Biology and Bioinformatics, Indiana University School of Medicine Indianapolis, Indiana, USA ; Department of Medical and Molecular Genetics, Indiana University School of Medicine Indianapolis, Indiana, USA.
C-W ChiangCenter for Computational Biology and Bioinformatics, Indiana University School of Medicine Indianapolis, Indiana, USA ; Department of Medical and Molecular Genetics, Indiana University School of Medicine Indianapolis, Indiana, USA.
L ChengCenter for Computational Biology and Bioinformatics, Indiana University School of Medicine Indianapolis, Indiana, USA ; Department of Medical and Molecular Genetics, Indiana University School of Medicine Indianapolis, Indiana, USA.
S K QuinneyCenter for Computational Biology and Bioinformatics, Indiana University School of Medicine Indianapolis, Indiana, USA ; Department of Obstetrics and Gynecology, Indiana University School of Medicine Indianapolis, Indiana, USA.
H WuCenter for Computational Biology and Bioinformatics, Indiana University School of Medicine Indianapolis, Indiana, USA ; Department of Medical and Molecular Genetics, Indiana University School of Medicine Indianapolis, Indiana, USA.
P ZhangCenter for Computational Biology and Bioinformatics, Indiana University School of Medicine Indianapolis, Indiana, USA ; Department of Medical and Molecular Genetics, Indiana University School of Medicine Indianapolis, Indiana, USA.
L LiCenter for Computational Biology and Bioinformatics, Indiana University School of Medicine Indianapolis, Indiana, USA ; Department of Medical and Molecular Genetics, Indiana University School of Medicine Indianapolis, Indiana, USA.
L ShenCenter for Computational Biology and Bioinformatics, Indiana University School of Medicine Indianapolis, Indiana, USA ; Departments of Radiology and Imaging Sciences, Indiana University School of Medicine Indianapolis, Indiana, USA.

Funding

Quality Assurance and Quality Control Project Management: Improving Submissions and Study Conduct in the Human Subjects Research Prior Approval ProcessUL1TR002529 · NCATS · INDIANA UNIVERSITY INDIANAPOLIS · PI MOE, SHARON M, WIEHE, SARAH ELIZABETH · 2018 to 2022
$27.2M
Indiana Clinical and Translational Sciences InstituteUL1TR001108 · NCATS · INDIANA UNIVERSITY INDIANAPOLIS · PI DENNE, SCOTT C., SHEKHAR, ANANTHA · 2013 to 2017
$23.3M
Drug-Drug Interactions Involving Antidiabetic AgentsR01DK102694 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI HENNESSY, SEAN, LI, LANG · 2014 to 2017
$2.4M
Evidence-based Drug-Interaction Discovery: In-Vivo, In-Vitro and ClinicalR01LM011945 · NLM · INDIANA UNIVERSITY INDIANAPOLIS · PI LI, LANG, ROCHA, LUIS M · 2014 to 2017
$1.8M
A Translational Bioinformatics Approach in the Drug Interaction ResearchR01GM104483 · NIGMS · OHIO STATE UNIVERSITY · PI LI, LANG · 2014 to 2017
$1.5M
Individualization of nifedipine dosing for preterm laborK23HD071134 · NICHD · INDIANA UNIVERSITY INDIANAPOLIS · PI QUINNEY, SARA K · 2012 to 2016
$629k
NIDDK NIH HHS R01 DK102694NLM NIH HHS R01 LM011945
6 · The paper itself

Abstract

We propose to study a novel pharmacovigilance problem for mining directional effects of high-order drug interactions on an adverse drug event (ADE). Our goal is to estimate each individual risk of adding a new drug to an existing drug combination. In this proof-of-concept study, we analyzed a large electronic medical records database and extracted myopathy-relevant case control drug co-occurrence data. We applied frequent itemset mining to discover frequent drug combinations within the extracted data, evaluated directional drug interactions related to these combinations, and identified directional drug interactions with large effect sizes. Furthermore, we developed a novel visualization method to organize multiple directional drug interaction effects depicted as a tree, to generate an intuitive graphical and visual representation of our data-mining results. This translational bioinformatics approach yields promising results, adds valuable and complementary information to the existing pharmacovigilance literature, and has the potential to impact clinical practice.

Identifiers

PMID26380157
PMCPMC4562164

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.