ArticleStandards in genomic sciences2015
Permanent draft genome sequence of Acidiphilium sp. JA12-A1.
Article in Standards in genomic sciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
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12 citing papers in PubMed, 28 citations in OpenAlex.
- Iron bioleaching and polymers accumulation by an extreme acidophilic bacterium.Archives of microbiology · 2024Article
- The First Description of the Microbial Diversity in the Amarillo River (La Rioja, Argentina), a Natural Extreme Environment Where the Whole Microbial Community Paints the Landscape Yellow.Microorganisms · 2024Article
- Prokaryotic communities in the historic silver mine Reiche Zeche.Extremophiles : life under extreme conditions · 2021Article
- Insights into Autotrophic Activities and Carbon Flow in Iron-Rich Pelagic Aggregates (Iron Snow).Microorganisms · 2021Article
- Unraveling the Central Role of Sulfur-OxidizingMicroorganisms · 2021Article
- Molecular Mechanisms Underpinning Aggregation inMicroorganisms · 2020Article
- Effect of Introduction of Exogenous StrainFrontiers in microbiology · 2019Article
- Microbial Communities of Polymetallic Deposits' Acidic Ecosystems of Continental Climatic Zone With High Temperature Contrasts.Frontiers in microbiology · 2019Article
- Article
- Reconstruction of the Metabolic Potential of AcidophilicFrontiers in microbiology · 2016Article
- Industrial Acetogenic Biocatalysts: A Comparative Metabolic and Genomic Analysis.Frontiers in microbiology · 2016Article
- Gene Loss and Horizontal Gene Transfer Contributed to the Genome Evolution of the Extreme Acidophile "Ferrovum".Frontiers in microbiology · 2016Article
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Authors and funding
9 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The tenacious association between strains of the heterotrophic alphaproteobacterial genus Acidiphilium and chemolithotrophic iron oxidizing bacteria has long been known. In this context the genome of the heterotroph Acidiphilium sp. JA12-A1, an isolate from an iron oxidizing mixed culture derived from a pilot plant for bioremediation of acid mine drainage, was determined with the aim to reveal metabolic properties that are fundamental for the syntrophic interaction between Acidiphilium sp. JA12-A1 and the co-occurring chemolithoautotrophic iron oxidizer. The genome sequence consists of 4.18 Mbp on 297 contigs and harbors 4015 protein-coding genes and 50 RNA genes. Additionally, the molecular and functional organization of the Acidiphilium sp. JA12-A1 draft genome was compared to those of the close relatives Acidiphilium cryptum JF-5, Acidiphilium multivorum AIU301 and Acidiphilium sp. PM DSM 24941. The comparative genome analysis underlines the close relationship between these strains and the highly similar metabolic potential supports the idea that other Acidiphilium strains play a similar role in various acid mine drainage communities. Nevertheless, in contrast to other closely related strains Acidiphilium sp. JA12-A1 may be able to take up phosphonates as an additional source of phosphor.
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