Evidence map›Paper›PMID 26379185›Full record

ArticlePloS one2015

No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.

Koldo Garcia-Etxebarria, María Alma Bracho, Juan Carlos Galán, Tomàs Pumarola, Jesús Castilla, Raúl Ortiz de Lejarazu, Mario Rodríguez-Dominguez, Inés Quintela, Núria Bonet, Marc Garcia-Garcerà and 4 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 31 citations in OpenAlex.

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  14. Genetic susceptibility to infectious diseases: Current status and future perspectives from genome-wide approaches.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2018
    Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 10 institutions in 1 country.

Koldo Garcia-EtxebarriaInstitut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Barcelona, Spain.
María Alma BrachoUnidad Mixta de Investigación en Genómica y Salud CSISP-UVEG/Institut Cavanilles-Universitat de València, València, Spain; CIBER de Epidemiologia y Salud Pública, Madrid, Spain.
Juan Carlos GalánCIBER de Epidemiologia y Salud Pública, Madrid, Spain; Servicio de Microbiología Hospital Universitario Ramón y Cajal and Instituto Ramón y Cajal de Investigación Sanitaria (IRYCIS), Madrid, Spain.
Tomàs PumarolaDepartment of Microbiology, Hospital Universitari Vall d'Hebron (HUVH), Universitat Autònoma de Barcelona (UAB), Vall d'Hebron Institut de Recerca (VHIR), Barcelona, Spain.
Jesús CastillaCIBER de Epidemiologia y Salud Pública, Madrid, Spain; Instituto de Salud Pública de Navarra, Pamplona, Spain.
Raúl Ortiz de LejarazuDepartment of Microbiology and Immunology, Hospital Clinico Universitario, Valladolid, Spain.
Mario Rodríguez-DominguezServicio de Microbiología Hospital Universitario Ramón y Cajal and Instituto Ramón y Cajal de Investigación Sanitaria (IRYCIS), Madrid, Spain; Red Española de Investigación en Patología Infecciosa (REIPI), Madrid, Spain.
Inés QuintelaGrupo de Medicina Xenomica, Universidade de Santiago de Compostela, Centro Nacional de Genotipado-Plataforma de Recursos Biomoleculares y Bioinformaticos-Instituto de Salud Carlos III (CeGen-PRB2-ISCIII), Santiago de Compostela, Spain.
Núria BonetInstitut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Barcelona, Spain.
Marc Garcia-GarceràInstitut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Barcelona, Spain.
Angela DomínguezCIBER de Epidemiologia y Salud Pública, Madrid, Spain; Departament de Salut Pública, Universitat de Barcelona, Barcelona, Spain.
Fernando González-CandelasUnidad Mixta de Investigación en Genómica y Salud CSISP-UVEG/Institut Cavanilles-Universitat de València, València, Spain; CIBER de Epidemiologia y Salud Pública, Madrid, Spain.
Francesc CalafellInstitut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Barcelona, Spain.
CIBERESP Cases and Controls in Pandemic Influenza Working Group
Pompeu Fabra University · ESCentro de Investigación Biomédica en Red de Epidemiología y Salud Pública · ESFundación Pública Galega de Medicina Xenómica · ESHospital Clínico Universitario de Valladolid · ESInstitut de Biologia Evolutiva · ESInstituto Ramón y Cajal de Investigación Sanitaria · ESRed Espanola de Investigacion en Patologia Infecciosa · ESUniversitat de Barcelona · ESUniversitat de València · ESVall d'Hebron Institut de Recerca · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

While most patients affected by the influenza A(H1N1) pandemic experienced mild symptoms, a small fraction required hospitalization, often without concomitant factors that could explain such a severe course. We hypothesize that host genetic factors could contribute to aggravate the disease. To test this hypothesis, we compared the allele frequencies of 547,296 genome-wide single nucleotide polymorphisms (SNPs) between 49 severe and 107 mild confirmed influenza A cases, as well as against a general population sample of 549 individuals. When comparing severe vs. mild influenza A cases, only one SNP was close to the conventional p = 5×10-8. This SNP, rs28454025, sits in an intron of the GSK233 gene, which is involved in a neural development, but seems not to have any connections with immunological or inflammatory functions. Indirectly, a previous association reported with CD55 was replicated. Although sample sizes are low, we show that the statistical power in our design was sufficient to detect highly-penetrant, quasi-Mendelian genetic factors. Hence, and assuming that rs28454025 is likely to be a false positive, no major genetic factor was detected that could explain poor influenza A course.

Indexed as

FemaleGene FrequencyGenomicsGenotypeHumansInfluenza A Virus, H1N1 SubtypeInfluenza, HumanMalePolymorphism, Single NucleotideRisk FactorsRNA, ViralSeverity of Illness IndexRNA, Viral

Identifiers

PMID26379185
PMCPMC4574704
OpenAlexW2201099545

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.