ArticlePloS one2015
Ultraconserved Elements Sequencing as a Low-Cost Source of Complete Mitochondrial Genomes and Microsatellite Markers in Non-Model Amniotes.
Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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Who cites it
25 citing papers in PubMed.
- Mitochondrial genomes from RNA-Seq reveal phylogeny and selection in Mepraia (Hemiptera: Reduviidae).Molecular genetics and genomics : MGG · 2026Article
- Complete mitochondrial genome characterization and exploratory mitochondrial DNA modification signals in square-head catfish Chaca chaca.Scientific reports · 2026Article
- Mining for Mitochondria: 68 Mitogenomes for Wrasses and Parrotfishes (F: Labridae) From Off-Target UCE Data.Ecology and evolution · 2026Article
- Phylogenetic comparative analysis of functional morphology sheds light on the evolution of seasonal migration in nightingale-thrushes (Turdidae: Catharus).Scientific reports · 2025Article
- Nucleic acid degradation after long-term dried blood spot storage.Molecular ecology resources · 2024Article
- Comparative mitogenomics of marine angelfishes (F: Pomacanthidae).Ecology and evolution · 2024Article
- An elevational shift facilitated the Mesoamerican diversification of Azure-hooded Jays (Ecology and evolution · 2023Article
- Low hybridization temperatures improve target capture success of invertebrate loci: a case study of leaf-footed bugs (Hemiptera: Coreoidea).Royal Society open science · 2023Article
- Range-wide population genomics of common seadragons shows secondary contact over a former barrier and insights on illegal capture.BMC biology · 2023Article
- The complete mitochondrial genome of Sporophila nigricollis (Aves, Passeriformes).Molecular biology reports · 2023Article
- Characterization of six new complete mitochondrial genomes of Chiasmodontidae (Scombriformes, Percomorpha) and considerations about the phylogenetic relationships of the family.Genomics & informatics · 2023Article
- Article
- Long-read Sequencing Data Reveals Dynamic Evolution of Mitochondrial Genome Size and the Phylogenetic Utility of Mitochondrial DNA in Hercules Beetles (Dynastes; Scarabaeidae).Genome biology and evolution · 2022Article
- Rainfall and sea level drove the expansion of seasonally flooded habitats and associated bird populations across Amazonia.Nature communications · 2022Article
- Mitochondrial phylogenomics and mitogenome organization in the parasitoid wasp family Braconidae (Hymenoptera: Ichneumonoidea).BMC ecology and evolution · 2022Article
- Genome-wide sequence data show no evidence of hybridization and introgression among pollinator wasps associated with a community of Panamanian strangler figs.Molecular ecology · 2022Article
- Phylogeny, diversification, and biogeography of a hemiclonal hybrid system of native Australian freshwater fishes (Gobiiformes: Gobioidei: Eleotridae: Hypseleotris).BMC ecology and evolution · 2022Article
- MitoFinder: Efficient automated large-scale extraction of mitogenomic data in target enrichment phylogenomics.Molecular ecology resources · 2020Article
- Mitochondrial genomes ofPeerJ · 2020Article
- Article
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Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Sequence capture of ultraconserved elements (UCEs) associated with massively parallel sequencing has become a common source of nuclear data for studies of animal systematics and phylogeography. However, mitochondrial and microsatellite variation are still commonly used in various kinds of molecular studies, and probably will complement genomic data in years to come. Here we show that besides providing abundant genomic data, UCE sequencing is an excellent source of both sequences for microsatellite loci design and complete mitochondrial genomes with high sequencing depth. Identification of dozens of microsatellite loci and assembly of complete mitogenomes is exemplified here using three species of Poospiza warbling finches from southern and southeastern Brazil. This strategy opens exciting opportunities to simultaneously analyze genome-wide nuclear datasets and traditionally used mtDNA and microsatellite markers in non-model amniotes at no additional cost.
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